SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96995

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene96995
CGTCGTGACCTTGGCTGTCACTCGGCAGTTTGGTTATGACTCTTGTTTTCTCCGTCAACATCTGCTTGTCTACATACGTCTGATATTAGGATTCGCTGGACAGTTCCTTTGTAGCTATAGTACCTTACCACTTTATGCACTTGTCACTCAGATGGGAACATATTACAAGGCAGCATTGATACCACCCAGAATCAGAAAAACAATTGAAGGGTGGGGGAAAGAAGCGAAG

Ace file of the UniGene sp_v3.0_unigene96995

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRE3_RICCO	-	-	1.0e-27	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	MLO-like protein 14	-	-	1.082e-09	-

Source	Gene names
Sma3	AT5G53760; At1g26700; At5g53760; GSVIVT00027647001; H0901F07.8; MLO11; MLO14; OSJNBb0017I01.22; Os04g0680800; OsI_17951; OsJ_16651; POPTRDRAFT_827617; RCOM_1124820; T24P13.8; VITISV_007843;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mlo-related protein	IPR004326	-	0.0	-
Sma3		IPR015706	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G26700.1	MLO14, ATMLO14 Seven transmembrane MLO family protein chr1:9228300-9232237 FORWARD LENGTH=554	9.0e-34	80%
RefSeq	Arabidopsis thaliana	NP_564257.1	MLO-like protein 14 [Arabidopsis thaliana]	1.0e-33	80%
RefSeq	Populus trichocarpa	XP_002329141.1	predicted protein [Populus trichocarpa]	4.0e-33	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMC0

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 76 - 483

Fln protein: VVTLAVTRQFGYDSCFLRQHLLVYIRLILGFAGQFLCSYSTLPLYALVTQMGTYYKAALIPPRIRKTIEGWGKEAK

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCGGCAGTTTGGTTATGACTCTTGTTTTCTCCGTCAACATCTGCTTGTCTACATACGTCTGATATTAGGATTCGCTGGACAGTTCCTTTGTAGCTATAGTACCTTACCACTTTATGCACTTGTCACTCAGATGGGAACATATTACAAGGCAGCATTGATACCACCCAGAATCAGAAAAACAATTGAAGGGTGGGGGAAAGAAGCGAAG

Fln Alignment:

AllPine_a_c16580___FGYDSCFLRQHLLVYIRLILGFAGQFLCSYSTLPLYALVTQMGTYYKAALIPPRIRKTIEGWGKEAK
B8LMC0_______________YGFDSCIMGKIAYIIPRLAVGVIIQVLCSYSTLPLYVLVTQMGTSFKREILNEHIHEGLSVWHQKAK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
177		33		66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain