SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96851

Length: 2418 nt

UniGene Fasta

>sp_v3.0_unigene96851
CGTCGTGACCTTGGCTGTCACTCATTCTAACTGGTTCAGGGCATTAGGCTAGGGTTTTTGGCTTTGATTCAACCTACACAGAGTTTATTCAACAACACGGATAAACAGCATTTTTAGAGATGTTCTAACTGGTTCAGGGCATTAGGCTAGGGTTTCTGGCTTGATTCAACCTACACAGAGTTTATTCAACAACACAACACTTACAGGTTAGTATAATTTTCTACCTCTCGTTGCGCACAAAACATTTGATTTTACTCATTACTATCCTCTGGAATGGAATGTTCTGTGTAACCTTCTTTAAATTCCAGAAGCATAAAGACCAGCTTTGCAACACAAACATTAAGTCAACTGTGAGACGCTGCTACCATGGCCGGTCTTAACGCCATGAAAATTATTAATTAACGCGACGTAGTTGGTGAATGGTGACTGAGCTGTGACGTGTCGAATCTTCATTGGATAGAGGAGGACGAAAATGCAGCCCTGAGATTGGCCAACAACCCCCTCATCACCCCAACTAACTCCACACGGCGTAATTAACGCTGCGGAGCCTTCAAGAGAAACGTTACATAAACCCTCCAAACAATTTCATTGGAGTCATGCGCATCTCTAGTCCCGCCATTATTTCTGTCTTGCTATGATTATTGCCTTCAAATTTTCCGGGAATCGTAGCTAAATTTAGCGGCTGTATGGCCAGAGCATCGTACCAGCCTACAGCTCTAGTCCCGCCATTATTTCTGCTATTCGGCTCTGTCTTGCTATAGCCTTCAAATATTTGGGGAATCGTAGCTAAATTAAACGTCAATATGGCCAGAGCATCGTGCCTGCCTACTGGTTCTCCCCTTGCCAGGGAATCGAACTGCATACCTCTTATTTCGTTCCTCAATGGAGAGATTTCAGGGATAGCTGTAAGCGTTTCGTTGAAGATTTCATCTACGAGGAGTGTGCGCAAGGGCGTTCGATGCGCTGTAGCTGAAGGATTTCGTGAAACCCTTGGCGTATCGGCACACCGGCCTCGCAGAGTTGTTGGCAGAGGTTCGAGATTGATAGGTTCTGGTTCAGCAGTGCCTAAACTTGTGGTTTCAAACAACGATCTTTCTAAACTGGTGGATACTTCAGATGAATGGATCTCTTCTCGTACAGGGATCCGTAATCGACGGATTCTTTCAGGTGATGAAACACTAACTGGTTTAGCTATAGAGTCATCTAGAAAAGCCCTTGAAATGGCGAAAGTCAGGCCAGAGGATGTTGACTTGGTTTTGATGTGTACCTCTACTCCAGATGATCTATTTGGTGGTGCTCCCCAAGTGCAGAGGGAGGTGGGTTGTATAAAAGCCTTGGCTTTTGACATTACAGCTGCTTGTAGTGGCTTTGTGTTGGGTCTTGTAACAGCTACACGTTTCATAAAAGGTGGCGGATTTGAGAATGTTTTGGTTATTGGAGCAGATGCTCTTTCTAGATATGTTGACTGGACAGACCGGGGCTCCTGCATTCTTTTTGGGGATGGAGCTGGTGCTGTGCTGTTACAGGCAGCTAAAGGAGATCAGGATGGTCTACTGGGTTTTGATCTACAGAGTGATGGGCATGGTCAAAAGCATTTGAGTGTCCCAGTTATTGGAGAAGGTGCAGTGAAGGACTTACGTAGCTCAAATGGTGCAGCACTGGAACCTCCAAAACCTTCATCCCATTCTTGTATTCAAATGAATGGGAAAGAGGTTTTCCGTTTTGCAGTAAACCGTGTTCCACAGGTTATTGAAGCAGCAATGGAAGAAGCTGGGATTGCAGGTTCACATTTGGACTGGTTGCTGCTTCATCAGGCAAACCAGAGGATTATTAGTGCTGTAGCTGATCGGCTGCAGATTCAACCTGATAGGGTAATAACAAATTTAGCTGATTATGGTAACACAAGTGCTGCATCTATTCCTCTGGCGCTTGATGAAGCTGTTCGGAGTGGAAGAGTTCAAAGTGGCCATGTTATTGCAACGGCAGGTTTTGGAGCTGGAGTTACATGGGGTTCAGCCATTGTGAGATGGGGTTGATTGAATATTGCTCACTTCAGGAATGGTAGACCAAGACAGCAGTGCTTGGCTGAAAAGGTATTACTGCCACGAGGAAAAGTTGATTGAGAAATCTAGTTCCTCCACATATACCCATTGTTAATTTTTTGATTCTCGAGTTCTTTCCAAGCTCAATTACGGCAGCACTTGGGTTGCTTTGTTGTTTTCCTTAATTTCCATTTCATATTTTATAATTGTAACTTTGTTACGATAGAGTAATGCAAACAGAATGTTCCTGGCAGTGTGCTTGACTTGATGGATACTGGTTTTTAACGGTCAATTAATAAAAGGCCTTTACTTCAAAGCCCAGCGTTACACTTCAATGATAATGTCTGTGTAGTGTACAGATAATAGTTAAAGGTAC

Ace file of the UniGene sp_v3.0_unigene96851

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-oxoacyl-synthase III n=3 Tax=Andropogoneae RepID=B6SKS5_MAIZE	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III	IPR013751	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Beta-ketoacyl-acyl carrier protein synthase III (FabH)	IPR004655	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G62640.1	KAS III 3-ketoacyl-acyl carrier protein synthase III chr1:23192502-23194737 FORWARD LENGTH=404	67%
RefSeq	Arabidopsis thaliana	NP_001031221.1	3-oxoacyl-[acyl-carrier-protein] synthase III [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002303516.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKT2

Fln msg:

Fln protein: MARASCLPTGSPLARESNCIPLISFLNGEISGIAVSVSLKISSTRSVRKGVRCAVAEGFRETLGVSAHRPRRVVGRGSRLIGSGSAVPKLVVSNNDLSKLVDTSDEWISSRTGIRNRRILSGDETLTGLAIESSRKALEMAKVRPEDVDLVLMCTSTPDDLFGGAPQVQREVGCIKALAFDITAACSGFVLGLVTATRFIKGGGFENVLVIGADALSRYVDWTDRGSCILFGDGAGAVLLQAAKGDQDGLLGFDLQSDGHGQKHLSVPVIGEGAVKDLRSSNGAALEPPKPSSHSCIQMNGKEVFRFAVNRVPQVIEAAMEEAGIAGSHLDWLLLHQANQRIISAVADRLQIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQSGHVIATAGFGAGVTWGSAIVRWG*

Protein Length: 412

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTAACTGGTTCAGGGCATTAGGCTAGGGTTTTTGGCTTTGATTCAACCTACACAGAGTTTATTCAACAACACGGATAAACAGCATTTTTAGAGATGTTCTAACTGGTTCAGGGCATTAGGCTAGGGTTTCTGGCTTGATTCAACCTACACAGAGTTTATTCAACAACACAACACTTACAGGTTAGTATAATTTTCTACCTCTCGTTGCGCACAAAACATTTGATTTTACTCATTACTATCCTCTGGAATGGAATGTTCTGTGTAACCTTCTTTAAATTCCAGAAGCATAAAGACCAGCTTTGCAACACAAACATTAAGTCAACTGTGAGACGCTGCTACCATGGCCGGTCTTAACGCCATGAAAATTATTAATTAACGCGACGTAGTTGGTGAATGGTGACTGAGCTGTGACGTGTCGAATCTTCATTGGATAGAGGAGGACGAAAATGCAGCCCTGAGATTGGCCAACAACCCCCTCATCACCCCAACTAACTCCACACGGCGTAATTAACGCTGCGGAGCCTTCAAGAGAAACGTTACATAAACCCTCCAAACAATTTCATTGGAGTCATGCGCATCTCTAGTCCCGCCATTATTTCTGTCTTGCTATGATTATTGCCTTCAAATTTTCCGGGAATCGTAGCTAAATTTAGCGGCTGTATGGCCAGAGCATCGTACCAGCCTACAGCTCTAGTCCCGCCATTATTTCTGCTATTCGGCTCTGTCTTGCTATAGCCTTCAAATATTTGGGGAATCGTAGCTAAATTAAACGTCAAT_-_ATGGCCAGAGCATCGTGCCTGCCTACTGGTTCTCCCCTTGCCAGGGAATCGAACTGCATACCTCTTATTTCGTTCCTCAATGGAGAGATTTCAGGGATAGCTGTAAGCGTTTCGTTGAAGATTTCATCTACGAGGAGTGTGCGCAAGGGCGTTCGATGCGCTGTAGCTGAAGGATTTCGTGAAACCCTTGGCGTATCGGCACACCGGCCTCGCAGAGTTGTTGGCAGAGGTTCGAGATTGATAGGTTCTGGTTCAGCAGTGCCTAAACTTGTGGTTTCAAACAACGATCTTTCTAAACTGGTGGATACTTCAGATGAATGGATCTCTTCTCGTACAGGGATCCGTAATCGACGGATTCTTTCAGGTGATGAAACACTAACTGGTTTAGCTATAGAGTCATCTAGAAAAGCCCTTGAAATGGCGAAAGTCAGGCCAGAGGATGTTGACTTGGTTTTGATGTGTACCTCTACTCCAGATGATCTATTTGGTGGTGCTCCCCAAGTGCAGAGGGAGGTGGGTTGTATAAAAGCCTTGGCTTTTGACATTACAGCTGCTTGTAGTGGCTTTGTGTTGGGTCTTGTAACAGCTACACGTTTCATAAAAGGTGGCGGATTTGAGAATGTTTTGGTTATTGGAGCAGATGCTCTTTCTAGATATGTTGACTGGACAGACCGGGGCTCCTGCATTCTTTTTGGGGATGGAGCTGGTGCTGTGCTGTTACAGGCAGCTAAAGGAGATCAGGATGGTCTACTGGGTTTTGATCTACAGAGTGATGGGCATGGTCAAAAGCATTTGAGTGTCCCAGTTATTGGAGAAGGTGCAGTGAAGGACTTACGTAGCTCAAATGGTGCAGCACTGGAACCTCCAAAACCTTCATCCCATTCTTGTATTCAAATGAATGGGAAAGAGGTTTTCCGTTTTGCAGTAAACCGTGTTCCACAGGTTATTGAAGCAGCAATGGAAGAAGCTGGGATTGCAGGTTCACATTTGGACTGGTTGCTGCTTCATCAGGCAAACCAGAGGATTATTAGTGCTGTAGCTGATCGGCTGCAGATTCAACCTGATAGGGTAATAACAAATTTAGCTGATTATGGTAACACAAGTGCTGCATCTATTCCTCTGGCGCTTGATGAAGCTGTTCGGAGTGGAAGAGTTCAAAGTGGCCATGTTATTGCAACGGCAGGTTTTGGAGCTGGAGTTACATGGGGTTCAGCCATTGTGAGATGGGGTTGA___TTGAATATTGCTCACTTCAGGAATGGTAGACCAAGACAGCAGTGCTTGGCTGAAAAGGTATTACTGCCACGAGGAAAAGTTGATTGAGAAATCTAGTTCCTCCACATATACCCATTGTTAATTTTTTGATTCTCGAGTTCTTTCCAAGCTCAATTACGGCAGCACTTGGGTTGCTTTGTTGTTTTCCTTAATTTCCATTTCATATTTTATAATTGTAACTTTGTTACGATAGAGTAATGCAAACAGAATGTTCCTGGCAGTGTGCTTGACTTGATGGATACTGGTTTTTAACGGTCAATTAATAAAAGGCCTTTACTTCAAAGCCCAGCGTTACACTTCAATGATAATGTCTGTGTAGTGTACAGATAATAGTTAAAGGTAC

Fln Alignment:

AllPine_a_c16280___MARASCLPTGSPLARESNCIPLISFLNGEISGIAVSVSLKISSTRSVRKGVRCAVAEGFRETLGVS--AHRPRRVVGRGSRLIGSGSAVPKLVVSNNDLSKLVDTSDEWISSRTGIRNRRILSGDETLTGLAIESSRKALEMAKVRPEDVDLVLMCTSTPDDLFGGAPQVQREVGCIKALAFDITAACSGFVLGLVTATRFIKGGGFENVLVIGADALSRYVDWTDRGSCILFGDGAGAVLLQAAKGDQDGLLGFDLQSDGHGQKHLSVPVIGEGAVKDLRSSNGAALEPPKPSSHSCIQMNGKEVFRFAVNRVPQVXXXXXXXXXXXXSHLDWLLLHQANQRIISAVADRLQIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQ
B8LKT2_______________MARASYLPAGSCLARDSNSKPRISFLTGEISGTAVSVSLKVSATRSVYKGVRCAVAEGFRETLGVSNSARPPRRVVGRGSKLIGSGSAVPKLVVSNHDLSKLVDTSDEWISSRTGIHNRRILSGDETLTGLAVESSRKALEMAKVKPEDVDLVLMCTSTPDDLFGSAPQVQREVGCIKALAFDITAACSGFVLGLVTATRFIKGGGFENVLVIGADALSRYVDWTDRGSCILFGDAAGAVLLQAVKGDQDGLLGFDLQSDGHGQKHLSVPAMGERAVKDLGSSNGAALKPPKPPSPSCIQMNGKEVFRFAVSRVPQVIEAAMEEAGMTGSHLDWLLLHQANQRIISAVADRLQIQPDRVITNLADYGNTSAASIPLALDEAVRSGRVQ

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
120	66	33			0.997452
157		66		33	0.997452
269		66	33		0.997452
598	16			83	0.994512
602	83		16		0.994512
1309		12		87	0.999964
1707	16	83			0.994512
1709			16	83	0.994512
1711			16	83	0.994512
1910			20	80	0.995493
1923	6		93		0.99903
1924		6		93	0.99903
1926	96			4	0.99411
1927		96		4	0.99411
2028	7		92		0.999664
2127	11	88			0.991528
2129	12		87		0.992554
2135	75			25	1.0
2162		87		12	0.992554
2189		25		75	0.996473
2265		90		10	0.90298
2322		90		9	0.999842
2332		9	90		0.999872
2372	80		10		0.959698
2375	88	11			0.923564
2378	16	83			0.994512
2388	20	20		60	0.992555

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain