SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96713

Length: 503 nt

UniGene Fasta

>sp_v3.0_unigene96713
GGACTAAGAATTAAAACAAAACACACAAATAGGGAGTGTAAGATCTCCGGTTTAAGTGATAAAATATGCAAAGAGCAGCTCTTCCAATGAAAGTTAGAGCTGAAGAAAAACGTGAAAATGAGCCTCCCCAAATTGTGGAGGTGACGGTGTTCGATTACTTTGCGAATACAAAACAAATTCCTTTGGCCTATTCCGGTGATCTTCCATGCTTAGATGTAGGCAGGAAAAAACGGCCCAACTATCTTCCAGTGGAGCTTTGCGAAATCCTTCCAGGCCAGAGATATACAAAGGCCCTTCCTTCTGCACAACGGACAGCACTTGTAGAGAAATCCAGGCAAAAGCCAAATGAACGAATCCAAGTGTTAACTCGGGCAATGCAAGTCAATGATTACAACTCTGACCCATTATTAAGTGCATTTAGTATCAATGTTGATAAACACTTGACAAATTTAGATGGCCGAGTTCTTGACCCACCCAGGCTAAGGTTTGGGAAGACTGTAGAG

Ace file of the UniGene sp_v3.0_unigene96713

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL	-	-	0.0	72%
FL-Next	tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	72%
Sma3	Argonaute protein group	-	-	2.675e-14	-

Source	Gene names
Sma3	AGO902; AGO912; AGO913; AGO914; At2g27040; At2g32940; At5g21030; B1059D01.1; B1100H02.17; GSVIVT00002671001; GSVIVT00017422001; GSVIVT00023378001; GSVIVT00025957001; H0820C10.3; Os01g0275200; Os01g0275600; Os04g0151800; OsI_01366; OsI_14737; OsJ_01274; Os

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nuclear euchromatin	GO:0005719	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	Cajal body	GO:0015030	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	chromatin silencing	GO:0006342	Biological Process	-
Sma3	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	production of siRNA involved in RNA interference	GO:0030422	Biological Process	-
Sma3	chromatin silencing by small RNA	GO:0031048	Biological Process	-
Sma3	histone H3-K9 methylation	GO:0051567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27040.1	AGO4, OCP11 Argonaute family protein chr2:11536795-11541503 REVERSE LENGTH=924	2.0e-40	50%
RefSeq	Arabidopsis thaliana	NP_001189613.1	argonaute 4 [Arabidopsis thaliana]	3.0e-40	50%
RefSeq	Populus trichocarpa	XP_002320489.1	argonaute protein group [Populus trichocarpa]	1.00053e-42	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4PLA9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 456 aas, your sequence is shorter than subject: 167 - 959

Fln protein: TKN*NKTHK*GV*DLRFK**NMQRAALPMKVRAEEKRENEPPQIVEVTVFDYFANTKQIPLAYSGDLPCLDVGRKKRPNYLPVELCEILPGQRYTKALPSAQRTALVEKSRQKPNERIQVLTRAMQVNDYNSDPLLSAFSINVDKHLTNLDGRVLDPPRLRFGKTVE

Protein Length: 168

Fln nts: GGACTAAGAATTAAAACAAAACACACAAATAGGGAGTGTAAGATCTCCGGTTTAAGTGATAAAATATGCAAAGAGCAGCTCTTCCAATGAAAGTTAGAGCTGAAGAAAAACGTGAAAATGAGCCTCCCCAAATTGTGGAGGTGACGGTGTTCGATTACTTTGCGAATACAAAACAAATTCCTTTGGCCTATTCCGGTGATCTTCCATGCTTAGATGTAGGCAGGAAAAAACGGCCCAACTATCTTCCAGTGGAGCTTTGCGAAATCCTTCCAGGCCAGAGATATACAAAGGCCCTTCCTTCTGCACAACGGACAGCACTTGTAGAGAAATCCAGGCAAAAGCCAAATGAACGAATCCAAGTGTTAACTCGGGCAATGCAAGTCAATGATTACAACTCTGACCCATTATTAAGTGCATTTAGTATCAATGTTGATAAACACTTGACAAATTTAGATGGCCGAGTTCTTGACCCACCCAGGCTAAGGTTTGGGAAGACTGTAGAG

Fln Alignment:

AllPine_a_c15991___MKVRAEEKRENEPPQIVEVTVFDYFANTKQIPLAYSGDLPCLDVGRKKRPNYLPVELCEILPGQRYTKALPSAQRTALVEKSRQKPNERIQVLTRAMQVNDYNSDPLLSAFSINVDKHLTNLDGRVLDPPRLRFGKTVE
Q4PLA9_______________MRVRSQGSQE-EPPQTVDVTVHDYFVNTKQTPLQFSADLPCLDVGRKKRPNYLPIELCKILPGQRYTKALSTQQRTXLVEQSRQKPDERMQVLLKAMDVNNYNSDPLLKACNINVDKQLVRLDGRVLDPPTLKFGKMEE

SNPs (tot: 3)

Position	A %	C %	T %	Probability
441		33	66	0.997467
443	66		33	0.997467
444	66		33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain