SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96693

Length: 497 nt

UniGene Fasta

>sp_v3.0_unigene96693
AAGGCTACGCCAAGCGTCGTGACCTTGGCTGTCACTCAGTTTTGCTGTTGGAAGTGGCGTGCGGTAGGAAGCCCGTGGACATACGAGCGGACGCGGAACCCTTCTTATTGGTGGAGTGGGTGTGGGAGCTGTACACCCATAAGAGTTTGCTAGAGGCAGCAGATCCGAAGCTGGGAAATGAATATGACATGGGCGAAATGGAGGTGGTGTTGAAACTGGGATTATTGTGCTCCAATATAGAGCCGAAAGCAAGGCCGGGAATGCGGCAAGTGTGTCAAATACTGGAAGGTGAAGCTCCTCTCCCTGACGTTCATATGGATTCATTTAGAGTGAATATTATGGATTAGTCCAGTGTAGGGGTTAACGGGTATGCTGCTATCGCTGACCCGGAGGAGAGGCTTCTACAGGAAAATCCAAGTGGAAGCCGAACAGAAGGATGACTGAATTTGCACTCTTGAAACTCTTCCAGCCCTTCATCATCGCCGTAGTGTAATCAC

Ace file of the UniGene sp_v3.0_unigene96693

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	L-type lectin-domain containing receptor kinase IV.4 n=1 Tax=Arabidopsis thaliana RepID=LRK44_ARATH	-	-	3.0e-22	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Lectin-like receptor kinase 7	-	-	4.744e-07	-

Source	Gene names
Sma3	AT4g02410; AT4g02420; At2g37710; At4g02410; At4g02420; GSVIVT00001301001; GSVIVT00001302001; GSVIVT00018441001; GSVIVT00021359001; GSVIVT00021360001; GSVIVT00029342001; GSVIVT00029344001; LRK1; LecRK7; POPTRDRAFT_560796; POPTRDRAFT_677145; POPTRDRAFT_7623

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3		IPR001899	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02420.1	Concanavalin A-like lectin protein kinase family protein chr4:1064363-1066372 REVERSE LENGTH=669	4.0e-27	54%
RefSeq	Arabidopsis thaliana	NP_567234.1	concanavalin A-like lectin kinase-like protein [Arabidopsis thaliana]	5.0e-27	54%
RefSeq	Populus trichocarpa	XP_002333002.1	predicted protein [Populus trichocarpa]	9.0e-25	52%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLJ6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 65 aas, putative chimeric sequence, your sequence is shorter than subject: 115 - 704

Fln protein: GYAKRRDLGCHSVLLLEVACGRKPVDIRADAEPFLLVEWVWELYTHKSLLEAADPKLGNEYDMGEMEVVLKLGLLCSNIEPKARPGMRQVCQILEGEAPLPDVHMDSFRVNIMD*

Protein Length: 116

Fln nts: AAGGCTACGCCAAGCGTCGTGACCTTGGCTGTCACTCAGTTTTGCTGTTGGAAGTGGCGTGCGGTAGGAAGCCCGTGGACATACGAGCGGACGCGGAACCCTTCTTATTGGTGGAGTGGGTGTGGGAGCTGTACACCCATAAGAGTTTGCTAGAGGCAGCAGATCCGAAGCTGGGAAATGAATATGACATGGGCGAAATGGAGGTGGTGTTGAAACTGGGATTATTGTGCTCCAATATAGAGCCGAAAGCAAGGCCGGGAATGCGGCAAGTGTGTCAAATACTGGAAGGTGAAGCTCCTCTCCCTGACGTTCATATGGATTCATTTAGAGTGAATATTATGGATTAG___TCCAGTGTAGGGGTTAACGGGTATGCTGCTATCGCTGACCCGGAGGAGAGGCTTCTACAGGAAAATCCAAGTGGAAGCCGAACAGAAGGATGACTGAATTTGCACTCTTGAAACTCTTCCAGCCCTTCATCATCGCCGTAGTGTAATCAC

Fln Alignment:

AllPine_a_c15958___DLGCHSVLLLEVACGRKPVDIRADAEPFLLVEWVWELYTHKSLLEAADPKLGNEYDMGEMEVVLKLGLLCSNIEPKARPGMRQVCQILEGEAPLPDVHMDSFRVNIM
B8LLJ6_______________DVFSFGVLLLEVTCGKRPADPLNDAKRMVLVEWVWKLHTEGRLVDASDPNLGKAYDMCQIEKVLKLGLLCCNPEPQSRLGMRHVCQILEGEAPLPDLRMASFNACIM

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
153	80	20			0.995495
155	80			20	0.995495
156	25		75		0.996473
157	20		80		0.995495
159	80	20			0.995495
160			80	20	0.995495
161		75		25	0.996473
162	75		25		0.996473
164	75	25			0.996473
166		75	25		0.996473
167		75		25	0.996473
168		25	75		0.996473
170	75	25			0.996473
171			75	25	0.996473
328			40	60	1.0
386			66	33	0.997452
395		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain