SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96588

Length: 1827 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene96588

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	auxin efflux carrier family protein [Arabidopsis thaliana] dbj\|BAB10403.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED98134.1\| auxin efflux carrier family protein [Arabidopsis thaliana]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Auxin:hydrogen symporter, putative	-	-	9.35e-12	-

Source	Gene names
Sma3	AT2G17500; At1g76520; At1g76530; At2g17500; At5g65980; B1032F05.35; B1114D08.5; F14G6.12; F14G6.13; GSVIVT00005991001; GSVIVT00005992001; GSVIVT00005993001; GSVIVT00019328001; Os09g0554300; OsI_09597; OsI_31863; OsI_32333; OsI_32336; OsJ_09025; OsJ_29847;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Auxin efflux carrier	IPR004776	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65980.1	Auxin efflux carrier family protein chr5:26392444-26394232 FORWARD LENGTH=395	55%
RefSeq	Arabidopsis thaliana	NP_201399.1	auxin efflux carrier family protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002306421.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL56

Fln msg: Warning!, your query overlaps and the subject is separated,

Fln protein: MAFWDLLTVASMPVVKILLISGLGAVLSTQYVGVLTEACLKHMNKVIFVVFTPALMFASLAQSVTFEDLISWWSMPVNVFLTYLFGAILGWTVVKITKPPEYLKGIVVANCCAGNMGNLLVIVVPALCQERGSPFGEPSACQVTGTAYASFSLALGSVFVWIYAYSLIRSSSQIHEEREIENGLDETVANIDYLDDEKIPNVDYLNAGETSKLLYTVQIIPQVPCSGRDNPSDKQNASSMxxxSSGKQSCFLAWFRKVKQYMDETGHLILEVLIAPPTVGVIAGFIVGAISPAKALIVGASAPLRVLQDSISLLGDGAIPGIILLMGGHLIKGLSSSKLRPVTIVLIICVKFALLPVIGIFVVKGASHLGLLPADPLYHYVLMVQYTVPPAMSIGTMAQLFNVGEQDCSVLFLWTYLWAAFAVTFWSTVYMWILLS*

Protein Length: 438

Fln nts: ATGGGGACAGTGGCCAGTAGTAGTAGAGGAAGTGAAAGAAAATCCGGGTCTCTAGAGATGAATTTCTCCTTAAGATAATAGGAGAGGAGCGTCATCCCTGCTTCAGCTCGGGAATACTCCTGCCCGTTTATTGAGCTTCACACAGTGGCTTAGCAAGGGATTTCACCTGCCATACAAAAGGCTTGCATTTGGTATGGAGTTACTGCGAATGAATGAAACCATAGAGAGGCATTGGTTCTGAGTACTGCCAATAGTATTCATCAAAAACCTCAGGAGAAAGAACGAAGAACTTAGAAAACAGT_-_ATGGCATTCTGGGACCTTCTAACTGTGGCATCCATGCCAGTTGTGAAGATTCTTCTGATAAGTGGTCTTGGAGCCGTTCTGTCAACTCAGTATGTTGGCGTGCTTACTGAAGCTTGTCTAAAACATATGAATAAGGTCATTTTTGTTGTATTTACACCAGCACTTATGTTCGCAAGCCTGGCACAATCAGTGACATTCGAAGATCTCATTTCCTGGTGGTCCATGCCAGTCAATGTTTTTCTTACATATCTCTTCGGGGCTATCCTTGGATGGACAGTTGTGAAAATAACCAAGCCTCCAGAATATTTGAAGGGCATAGTTGTTGCAAACTGTTGTGCTGGAAACATGGGAAATCTTCTCGTCATTGTTGTCCCTGCGTTGTGTCAAGAACGGGGAAGTCCCTTTGGAGAACCCAGTGCTTGCCAAGTAACTGGGACAGCATATGCTTCATTTTCTCTGGCACTTGGCAGTGTCTTCGTATGGATTTATGCCTACAGTCTTATACGATCATCAAGTCAAATTCACGAAGAAAGGGAAATAGAAAATGGGCTTGATGAGACGGTCGCAAATATTGATTACTTAGATGACGAGAAAATCCCAAATGTTGATTACTTAAATGCTGGAGAAACGTCTAAACTTTTGTACACAGTCCAAATAATTCCGCAAGTGCCCTGTTCTGGACGAGATAATCCTTCTGATAAGCAGAATGCAAGCAGCATGxxxxxxxxxTCTAGTGGAAAGCAAAGCTGTTTCCTAGCCTGGTTCAGAAAAGTTAAACAATATATGGATGAAACTGGACACCTAATTCTTGAGGTGTTAATAGCGCCTCCTACTGTTGGAGTGATTGCTGGATTTATTGTTGGAGCAATCTCACCAGCAAAGGCTTTAATTGTTGGTGCATCTGCTCCTCTTCGAGTGCTCCAAGATTCCATTTCATTACTGGGAGATGGAGCCATTCCAGGCATCATCCTATTAATGGGAGGACATCTAATCAAAGGTTTGAGCTCTTCAAAGCTAAGACCTGTGACTATTGTATTAATTATCTGTGTGAAGTTCGCATTACTTCCAGTGATTGGAATATTTGTAGTTAAAGGGGCATCCCATCTTGGGTTATTGCCAGCAGATCCATTGTATCACTATGTACTGATGGTCCAGTACACAGTCCCACCTGCTATGAGTATTGGGACAATGGCACAATTATTCAACGTGGGGGAACAAGACTGCTCTGTGCTTTTCTTATGGACTTATCTCTGGGCAGCCTTTGCTGTGACCTTTTGGTCAACAGTCTACATGTGGATTTTGTTGTCATAA___TTTTTTATCACTTTCTTCTAGTTCGAGTCCATTGGTTGGACCTTTACTTTTCAACCCAAGTTGAAAACTGATCAATCTTCATTCGTTTCATTCATTATTTCAATCGGCACAATATATTATTGTATTACATATCTTCGATGTAAAATATAGGAGTCATTTACTTTCAACATAGGATGCATCCATATATCTCTGCAAATGAATATAATTTCTACATT

Fln Alignment:

AllPine_a_c15715___MAFWDLLTVASMPVVKILLISGLGAVLSTQYVGVLTEACLKHMNKVIFVVFTPALMFASLAQSVTFEDLISWWSMPVNVFLTYLFGAILGWTVVKITKPPEYLKGIVVANCCAGNMGNLLVIVVPALCQERGSPFGEPSACQVTGTAYASFSLALGSVFVWIYAYSLIRSSSQIHEEREIENGLDETVANIDYLDDEKIPNVDYLNAGETSKLLYTVQIIPQVPCSGRDNPSDKQNASSMAIxxNSSSGKQSCFLAWFRKVKQYMDETGHLILEVLIAPPTVGVIAGFIVGAISPAKALIVGASAPLRVLQDSISLLGDGAIPGIILLMGGHLIKGLSSSKLRPVTIVLIICVKFALLPVIGIFVVKGASHLGLLPADPLYHYVLMVQYTVPPAMSIGTMAQLFNVGEQDCSVLFLWTYLWAAFAVTFWSTVYMWILLS
B8LL56_______________MAFWDLLIVASMPVVKILLISGLGAVLSTRYAGVLTEDSLKHVNKVIFVVFTPALMFASLAQSVTFEDLISWWSMPFNVFLTFLFGAILGWIIVKITKPPEYLNGIVVANCCAGNMGNLLLIVVPALCHEKGSPFGEPSVCKLNGIAYASFSMALGSVFIWTYAYSLIRSSSQIHEEKEFKNGL-----------EEKIPNIDY--AGETSKLLQTIQIIPEVPSSGGDYPSDKQSASGLVVxxSSSSKKPSCFQAWPRKVKQYMKKTADLLFEELKAPPTIGVIAGFMVGAIPPVNALIVGASAPLRVIQDSISLLGDGAIPGIILLMGGHLVKGLSSSKLRPMIIVLIICAKFVLLPVIGIFVVKGASNLGLLPADPLYHFVLMIQYTVPPAMNIGTMAQLFNVGEQECSVIFFWTYLLAAISLTFWSTVYMWILFS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
184	66		33		1.0
394	14	85			0.999981
396		85	14		0.999981
397	85		14		0.999981
412		14		85	0.999981
585	84			15	0.999986
654		81		18	0.999994
727	13		86		0.999973
728		86		13	0.999973
769			86	13	0.999973
826		11		88	0.923564
835		88		11	0.991528
874		83		16	0.994512
1156			20	80	0.995493
1266		85	14		0.993533
1294	85		14		0.993533
1295	14		85		0.993533
1608	12		87		0.992554
1609		12	87		0.992554
1633		85	14		0.993533
1649		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain