SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96511

Length: 1370 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene96511

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana] dbj\|BAA97389.1\| acid phosphatase [Arabidopsis thaliana] dbj\|BAD95053.1\| acid phosphatase [Arabidopsis thaliana] gb\|ABD19661.1\| At5g51260 [Arabidopsis thaliana] gb\|AED96059.1\| HAD supe	-	-	8.99998e-41	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Acid phosphatase	-	-	4.63e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	4.025e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		4.025e-11	%
Sma3	Riboflavin metabolism	00740		4.025e-11	%

Source	Gene names
Sma3	ACP; APS-1; APS-1(1); APS-AA2; APS1; At4g29260; At4g29270; At5g51260; B1140B01.1; GSVIVT00016639001; GSVIVT00030850001; GSVIVT00034280001; GSVIVT00034281001; OSJNBa0040K22.135; OSJNBa0041F13.34; OSJNOa0023G10.4; Os05g0190500; Os05g0192100; Os06g0139800; O

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Vegetative storage protein/acid phosphatase	IPR014403	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51260.1	HAD superfamily, subfamily IIIB acid phosphatase chr5:20832222-20833466 REVERSE LENGTH=257	46%
RefSeq	Arabidopsis thaliana	NP_199939.1	HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002328826.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADB9

Fln msg: Separated hits, possible frame ERROR between 826 and 957, your sequence is longer than subject: 355 - 268

Fln protein: MASLLQINHHHLNLLCALQPTTAKHSPRISNPSFSSMVRLPAHSLISHQHHNIHSTKPKLPKAFNVCQSTAQEVTWELNQSPEDYQVNCEAWRFGVETNTLRSWTVVPPECVEYVKNYMAGSGSQYLRDLDMVANESIAYVNSLKLSGDGKDAWVFDLDETLISTLPYFAAHQFGGEVIDVDDIIKTWLNRAAAPALVASHRLYAHLLELGFKIFLLTGRPHNQGNVTERNLVRAGYHSWESLLFR*xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLCCRQPEDYEKSAVVYKSEKRLKIEQDGFRIRGNSGDQWSDLTGYSVGDRTFKLPNPMYYVA*

Protein Length: 356

Fln nts: CTCAGATCTCAGCCTCATTTTCTTCCATGGCTTAGCACGAGGATCAATCACCACCAGTGCGATCTCACTCACATCTTCTTCC_-_ATGGCTTCGCTTCTGCAAATCAACCACCACCATCTCAACCTCCTCTGCGCTCTACAACCCACCACAGCCAAGCACAGCCCCAGAATCTCCAATCCCTCTTTCTCTTCCATGGTTCGGCTTCCCGCGCATTCCCTCATTAGTCACCAACATCACAATATCCACTCCACCAAACCCAAACTTCCAAAAGCCTTCAATGTCTGCCAATCCACAGCCCAGGAGGTCACATGGGAGCTCAATCAATCCCCTGAAGACTACCAGGTTAACTGCGAAGCCTGGAGGTTCGGTGTAGAAACAAATACCCTGCGCTCCTGGACTGTGGTTCCTCCTGAATGCGTGGAATACGTGAAAAACTATATGGCCGGCAGTGGAAGCCAATATTTGAGGGATTTAGACATGGTAGCCAACGAATCCATAGCTTATGTTAACTCTCTGAAACTCTCAGGCGATGGGAAGGACGCCTGGGTTTTCGACTTGGACGAAACCCTCATCTCAACTCTGCCCTATTTCGCAGCCCACCAGTTCGGCGGAGAGGTAATTGATGTGGATGATATCATTAAGACATGGTTAAATCGGGCAGCGGCCCCGGCATTGGTTGCCAGTCATAGATTATACGCCCATCTGCTTGAGTTGGGTTTCAAGATCTTCTTGTTAACTGGCAGGCCACATAACCAGGGGAATGTCACTGAGAGGAATCTGGTCCGAGCTGGTTATCATTCATGGGAGTCGCTTTTATTCAGGTAACCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTGTGTTGCAGGCAGCCGGAAGATTATGAGAAGAGCGCTGTGGTTTATAAGTCTGAGAAGAGATTGAAGATTGAGCAAGATGGGTTCAGAATCCGAGGGAACTCTGGTGATCAGTGGAGCGATTTGACTGGATACTCTGTTGGGGACAGGACATTCAAGCTGCCTAATCCCATGTATTACGTTGCCTGA___CTTAATGCTTTGTTTTGTTTGTTTGCTTGGGGTAACGCATTGCGAAATGTGCAAACCCATTTTTTCCCCTTGTTCCGGGATCCATAAAATGGCCCATTCATCGTTAGAAGCATGCTTTGTTATCAAATCCAATTATTGGGTAGATGTTTTACCCAAAATAAAACTCTAACATTAGATGCATATTTTGTTATCAAACCCAGTTAATTCAAGATTTTAAGACTGTAC

Fln Alignment:

AllPine_a_c15524___AHSLISHQHHNIHSTKPKLPKAFNVCQSTAQEVTWELNQSPEDYQVNCEAWRFGVETNTLRSWTVVPPECVEYVKNYMAGSGSQYLRDLDMVANESIAYVNSLKLSGDGKDAWVFDLDETLISTLPYFAAHQFGGEVIDVDDIIKTWLNRAAAPALVASHRLYAHLLELGFKIFLLTGRPHNQGNVTERNLVRAGYHSWESLLFR*PxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLCCRQPEDYEKSAVVYKSEKRLKIEQDGFRIRGNSGDQWSDLTGYSVGDRTFKLPNPMYYVA
D5ADB9_______________AHTPITHQHPHIHSTTRKIPKVFNVYQSTVHEETSELKQSPEDYQVNCEAWRFGVETNTLRSWNVVPPECVEYVKNYMIGSGSQYVRDSNMVANESIAYVNSLQLSGDGKDAWVFDVDETLISTLPYFAAHQFGGEVIAEDDFNVKWLDRAVAPALPASHKLYARLLELGFKIFLLTGRRHCQRNVTERNLVRAGYHSWEALFLREPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLFLREPEDRAKSAVVYKSERRLKIEQNGFRIRGNSGDQWSDLTGYSVGDRTFKLPNPMYYVA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
103	88		11		0.991528
104		11		88	0.991528
1219		88	11		0.991528

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain