SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96478

Length: 853 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene96478 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE9_ARATH	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	2.288e-09	-

Source	Gene names
Sma3	60I2G14; At2g05390; At2g15650; At2g17490; B1110B01.13; B1110B01.4; BA4; F11I4_21; F28G4.2; LOC_Os03g11850; LOC_Os03g29130; LOC_Os03g54804; LOC_Os03g56676; LOC_Os03g61660; LOC_Os10g01750; LOC_Os10g02960; LOC_Os10g29420; LOC_Os10g34890; LOC_Os10g36460; LOC_

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	MATH	IPR002083	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR010256	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Berberine/berberine-like	IPR012951	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 284 - 363

Fln protein: DKTIVTFKWLYKLKHVADGSMEKYKARFVARGLSQRKV*TMIFAPVARYTTIRLIIALVASQGWNLHQMDVKTAFLHGSIKEEVYVEQPEGFEIYD*KSHVCRLKKALYGLKQAPRAWYERIDSYLMKLGFTRSEADPNLYFKVEDDKPLILVLYVDDLFLIGANPLIHKCKRELASEFEMKDQGLEVWQKPREIFLSQEKYVVKISERFGMMDYKPVTTLRILTFRSYMIVMSDQTWEMPLSFKNSFALMFLVNLRPNICFAISTVSSYLVEPHCIDVRNLLP

Protein Length: 285

Fln nts: GACAAGACAATTGTCACTTTTAAATGGCTTTACAAGTTAAAGCATGTAGCAGATGGAAGTATGGAAAAGTATAAGGCTCGTTTTGTTGCTCGTGGTTTATCCCAAAGGAAGGTATAGACTATGATATTTGCACCAGTTGCCAGATATACGACCATCCGCTTGATCATAGCCCTTGTGGCTTCACAAGGATGGAACCTACATCAGATGGATGTCAAGACCGCGTTCTTGCATGGTTCTATCAAAGAAGAGGTCTATGTGGAGCAACCTGAAGGATTTGAGATTTATGATTGAAAATCTCATGTATGCAGGTTGAAGAAGGCTCTCTATGGGCTGAAGCAAGCACCCCGAGCATGGTATGAGAGGATCGATAGCTACTTGATGAAGCTGGGATTCACTAGGAGTGAAGCCGATCCTAACCTTTACTTTAAGGTTGAAGATGACAAGCCTCTCATACTGGTGTTGTATGTGGATGACCTCTTTCTAATAGGTGCAAACCCTCTCATTCACAAATGTAAGAGGGAGCTGGCTTCTGAATTTGAAATGAAGGACCAAGGACTTGAAGTATGGCAGAAGCCAAGGGAAATTTTCCTATCTCAAGAAAAATATGTGGTAAAGATATCGGAAAGATTTGGTATGATGGACTACAAGCCTGTGACTACCTTGAGGATCTTAACTTTTAGAAGTTATATGATAGTGATGTCGGACCAGACTTGGGAAATGCCTCTGAGCTTCAAAAACTCATTCGCATTGATGTTCTTGGTGAACCTCCGTCCAAACATATGCTTTGCAATTAGCACTGTGAGTTCATATTTGGTTGAGCCTCACTGCATTGATGTTAGGAATCTTCTCCCAT

Fln Alignment:

AllPine_a_c15443___DKTIVTFKWLYKLKHVADGSMEKYKARFVARGLSQRKV*TM--IFAPVARYTTIRLIIALVASQGWNLHQMDVKTAFLHGSIKEEVYVEQPEGFEIYD*KSHVCRLKKALYGLKQAPRAWYERIDSYLMKLGFTRSEADPNLYFKV-EDDKPLILVLYVDDLFLIGANPLIHKCKRELASEFEMKDQGL-------EVWQKPREIFLSQEKYVVKISERFGMMDYKPVTTLRILTFRSYMIVMSDQTWEMPLSFKNSFALMFLVNLRPNICFAISTVSSYLVEP
B8LKV8_______________EKECISVKWVYKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKVNEQGQILIVCLYVDDLIYTG-NLTIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVST-PVGVGTKLSREQNEMDFDSTIFRKLVGSLMYLTATRPDIMYGVSLISRFMDTP

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
414		85		14	0.993533
435	16		83		0.994512
442		16		83	0.994512
444	83		16		0.994513
445	16		83		0.994513
450	16		83		0.994512
451	33		66		1.0
471		83		16	0.994513
473	16		83		0.994512
474		83		16	0.994514
477		83		16	0.994514
478	83		16		0.994512
491		66		33	1.0
497			20	80	0.995493
498		83		16	0.994512
501	83		16		0.994512
508	16		83		0.994512
512	33		50		1.0
514	33		66		1.0
520		16		83	0.994512
538	80		20		0.995493
556		20		80	0.995493
570	60		40		1.0
580		60		40	1.0
588		80		20	0.995493
591		60		40	1.0
592	60		40		1.0
593			80	20	0.995493
598		80		20	0.995493
604	60		40		1.0
614		20		80	0.995493
620	80		20		0.995493
622	60	20		20	0.99255
628	80		20		0.995493
634			80	20	0.995493
635	80		20		0.995493
638	20		80		0.995493
639		80		20	0.995493
641	40		60		1.0
646	40		60		1.0
677	25		75		0.996473
689		25	75		0.996473
701		75		25	0.996473
710	25		75		0.996479
724	33		33	33	0.997752
727			33	66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain