SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96256

Length: 269 nt

UniGene Fasta

>sp_v3.0_unigene96256
TGAGCCGGCGACTTATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTGGCGAGAGCGAGTCTTCATGGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGA

Ace file of the UniGene sp_v3.0_unigene96256

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=ORF40u; Pinus koraiensis (Korean pine). Plastid; Chloroplast.	-	-	0.0	97%

Source	Gene names
Sma3	GSVIVT00021227001; GSVIVT00035369001; Os01g0790900; orf106b;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	photosystem I	GO:0009522	Cellular Component	-
Sma3	chloroplast ribulose bisphosphate carboxylase complex	GO:0009573	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	proton-transporting ATP synthase complex, catalytic core F(1)	GO:0045261	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	ribulose-bisphosphate carboxylase activity	GO:0016984	Molecular Function	-
Sma3	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	-
Sma3	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	carbon fixation	GO:0015977	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Ribulose bisphosphate carboxylase, large subunit, C-terminal	IPR000685	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal	IPR000793	-	-
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	ATPase, F1 complex, delta/epsilon subunit	IPR001469	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	ATPase, F1 complex, beta subunit	IPR005722	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	K homology domain-like, alpha/beta	IPR015946	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q85WS9

Fln msg: atg_distance in limit (1-15): atg_distance = 2, W2: There is no M at the beginning,

Fln protein: SRRLIGSGLVKGTHRSRGESESSWGNCHCLWTRTWVIYP*

Protein Length: 41

Fln nts: TGAGCCGGCGACTTATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTGGCGAGAGCGAGTCTTCATGGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGA___CCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGA

Fln Alignment:

AllPine_a_c14874___SRRLIGSGLVKGTHRSRGESESSWGNCHCLWTRTWVIYP
Q85WS9_______________SRRLIGSGLVKGTHRSRSESESSWGNCHCLWTRTWVIYP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
52	33		66		0.997452
60	75		25		0.996473
169	25			75	0.996473
170		25	75		0.996473
202	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain