SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96230

Length: 2540 nt

UniGene Fasta

>sp_v3.0_unigene96230
ATGGGGGGCTTCGATTAAGATAAAATTAATCGACTGTGACTGTGGCACTGAAGTACCCAGGTTCATATCCATAGGCTTGACTTTCTACAAAGCCAAATTGCACACGGCAACTCTCTCTTTCTGGGAGCTTTCCCGCTACCTTGGTTTCTCGTCTTATTAAAATAAACTCTGATTTCGTTCACTGCCTATAGACTCTGCTTTCGTTCAAGGCATTGAAGTGCGGGAACAAGGTTAAAATCTCATCACGTTTACGAGATTAATGGCTAGATCGGAGTTTTTTTGCTCGGAAAACTTGTTGGGTGCCTGCAATCTGTCTCGCAATGTTTACAGAAGCGTAGGCGATGATCCCAGCTATCTGAGGGCTGATTTAAACGAAACTACTGTTGCCATTGCTTTTCATGGCATTCTCGATACCCATGTCTTCCAAGCAACAGCAACCAAGTTTGGAGAATGTCAAAGTGGTTTTCTGGAGTGGCTGAAAGATGGGAACAATCAACCAGCCTTTCTGCATCAGGGTTCGCTCACCCGATTTCACAACCTCTTGAATAATCCCAGATTTCAGGAAGAGGTCCTTCTGGAATATGAAAGGGGTAAGAACGTATTGTTCACTGGTCACTCCATGGGCGGAGCTATTGCTGCCTTGGCCACGCTATGGATGTTGGATAAGCACCAGCAGCAGCACCCTGGCAAGCCTAAATCTTTTTTCTGCATCACGTTTGGCTTCCCGTTGATTGGGGACGAAACTCTCGCACGAGGAGTTCGTCGCAAGGGGTGGACGGATCAGTTCTGCCATGTTGTCTCAGGACGTGATGTCATCTCTAGGGTTTTGTTGGCTCCTTCCATATCGGTGTCTGAGGCCTTGGAATCATTTTTACCATATTTGAAGAGATACCTGGAGAATGCAGGGGATTTACATGGTTCCACTGACACACCCATGGAAGAAGCCCTTCCACAGGGCAGTGCTGAGTTTGTGAGCACTGTACTCCAGTACTGCTCTGCTGTAGCGAATTATAATAGCGCAACCAACATGAACCCCAACAACCCGTTAATGGCTGCTGTAAGGCCTCTCGTGAAGTTGAGTCCTTATAGGCCATTTGGCCATTATTTGTTCTGCTCCAAGCGTGGTGGGATTTGGATAGAAAATCATTTTGCTGTGTTTTCCTTTCTTTATTACGCCCTGCAATTTTCAGATGCTGCCCTGCAAATTTCAGATGCTAGTTGTGACGAATTCATCTTGGAGCACGTTGGTTATTCAAATAGCTTGCCCAGTGTCCTGCAAAATATAGTGAAGTTGAATGAGCTTTCAGAAATTCCTTTGTCGGAAACAGGATCAAACTATCAAGACAGCAGGACAATACAACTGGAAGAGCTTGGGCTTGGAATTCAGAATTGCCCAGCAAGACTTGCCCTCAGAGCTGCGGGACAAGTTTCGAAGCAGCAGAGGGAGAACCGTTCCAAATTGGAGAATGAAGTAAAAGGAAAGATAGAAGCGGCCATCAAAGAAATAGAAGAGTATCGTGCGCAGTGTCTCAGAAATGGCACTGGTTACTACGACTCGTTCAAAAAGAAGCAACATAGAACAGACTTTGATGCTAACCTTAACAGGCTGAAGCTGGCAGGCTGGTTCGACGAAATCATAACGATGATCAGCAAGGATGAGTTACCGGACGATTTCCAGTGTAGTGAAGTGTGGATAAGATTGGGCACTCACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCTCTGATCAGCCCACGATGCTCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGTTTAACGCTTGCTAATAATGCAGCGGGTTATGAAAACTCCATAGCAGGATTGGAAAAGTCACTGAGGCCTTTGATCGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACCGTGTGGTCAAGCGGTTGTGGGAAAACATGACTCCACTGCAGAAATCAACCTCTCCCATCTCCGATGTTATTGGCAGGCACCCAGAACTGATGAACTAATCATGTAGATGATGTGAGTAGCCATTGCACAAGTAGTACATATTAGAGCAGTCTTGCTGTTTCTGTTGCTTTCTATACATTAGAACAAAGGTATTTCTCTTCACAATATCTTAAAGTTAAGATCAGCACTCACTCACATATATATAATGAGTACTGGGATGAAATAGTTTTATGGTTTTTGTATGAAATGGTTTTTATAAGTACTTATTTGAGTAGTCTTGTTATTTCTGTTGCATTATGTACACAAGGACTAAGATATATCTCCACTCTGTTGATGCTAAAATCAGGACTCATTCACATGTATATTATGAGTAGTACTGGTTAGAAAATTCTTGTATTTCTATTGCCAATGTATACAAGGACTAAA

Ace file of the UniGene sp_v3.0_unigene96230

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	enhanced disease susceptibility 1 protein [Solanum tuberosum]	-	-	0.0	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%

Source	Gene names
Sma3	EDR1;

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVM4

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MARSEFFCSENLLGACNLSRNVYRSVGDDPSYLRADLNETTVAIAFHGILDTHVFQATATKFGECQSGFLEWLKDGNNQPAFLHQGSLTRFHNLLNNPRFQEEVLLEYERGKNVLFTGHSMGGAIAALATLWMLDKHQQQHPGKPKSFFCITFGFPLIGDETLARGVRRKGWTDQFCHVVSGRDVISRVLLAPSISVSEALESFLPYLKRYLENAGDLHGSTDTPMEEALPQGSAEFVSTVLQYCSAVANYNSATNMNPNNPLMAAVRPLVKLSPYRPFGHYLFCSKRGGIWIENHFAVFSFLYYALQFSDAALQISDASCDEFILEHVGYSNSLPSVLQNIVKLNELSEIPLSETGSNYQDSRTIQLEELGLGIQNCPARLALRAAGQVSKQQRENRSKLENEVKGKIEAAIKEIEEYRAQCLRNGTGYYDSFKKKQHRTDFDANLNRLKLAGWFDEIITMISKDELPDDFQCSEVWIRLGTHYRLLVEPLDIANYYRLGKNEDSGPYLRNARPRRYTILQKWLEENNVIQQQQPSPTGSDQPTMLTQDSCLWAHVEEIACLTLANNAAGYENSIAGLEKSLRPLIDSNGLSMEELVAGNSTFNRVVKRLWENMTPLQKSTSPISDVIGRHPELMN*

Protein Length: 639

Fln nts: ATGGGGGGCTTCGATTAAGATAAAATTAATCGACTGTGACTGTGGCACTGAAGTACCCAGGTTCATATCCATAGGCTTGACTTTCTACAAAGCCAAATTGCACACGGCAACTCTCTCTTTCTGGGAGCTTTCCCGCTACCTTGGTTTCTCGTCTTATTAAAATAAACTCTGATTTCGTTCACTGCCTATAGACTCTGCTTTCGTTCAAGGCATTGAAGTGCGGGAACAAGGTTAAAATCTCATCACGTTTACGAGATTA_-_ATGGCTAGATCGGAGTTTTTTTGCTCGGAAAACTTGTTGGGTGCCTGCAATCTGTCTCGCAATGTTTACAGAAGCGTAGGCGATGATCCCAGCTATCTGAGGGCTGATTTAAACGAAACTACTGTTGCCATTGCTTTTCATGGCATTCTCGATACCCATGTCTTCCAAGCAACAGCAACCAAGTTTGGAGAATGTCAAAGTGGTTTTCTGGAGTGGCTGAAAGATGGGAACAATCAACCAGCCTTTCTGCATCAGGGTTCGCTCACCCGATTTCACAACCTCTTGAATAATCCCAGATTTCAGGAAGAGGTCCTTCTGGAATATGAAAGGGGTAAGAACGTATTGTTCACTGGTCACTCCATGGGCGGAGCTATTGCTGCCTTGGCCACGCTATGGATGTTGGATAAGCACCAGCAGCAGCACCCTGGCAAGCCTAAATCTTTTTTCTGCATCACGTTTGGCTTCCCGTTGATTGGGGACGAAACTCTCGCACGAGGAGTTCGTCGCAAGGGGTGGACGGATCAGTTCTGCCATGTTGTCTCAGGACGTGATGTCATCTCTAGGGTTTTGTTGGCTCCTTCCATATCGGTGTCTGAGGCCTTGGAATCATTTTTACCATATTTGAAGAGATACCTGGAGAATGCAGGGGATTTACATGGTTCCACTGACACACCCATGGAAGAAGCCCTTCCACAGGGCAGTGCTGAGTTTGTGAGCACTGTACTCCAGTACTGCTCTGCTGTAGCGAATTATAATAGCGCAACCAACATGAACCCCAACAACCCGTTAATGGCTGCTGTAAGGCCTCTCGTGAAGTTGAGTCCTTATAGGCCATTTGGCCATTATTTGTTCTGCTCCAAGCGTGGTGGGATTTGGATAGAAAATCATTTTGCTGTGTTTTCCTTTCTTTATTACGCCCTGCAATTTTCAGATGCTGCCCTGCAAATTTCAGATGCTAGTTGTGACGAATTCATCTTGGAGCACGTTGGTTATTCAAATAGCTTGCCCAGTGTCCTGCAAAATATAGTGAAGTTGAATGAGCTTTCAGAAATTCCTTTGTCGGAAACAGGATCAAACTATCAAGACAGCAGGACAATACAACTGGAAGAGCTTGGGCTTGGAATTCAGAATTGCCCAGCAAGACTTGCCCTCAGAGCTGCGGGACAAGTTTCGAAGCAGCAGAGGGAGAACCGTTCCAAATTGGAGAATGAAGTAAAAGGAAAGATAGAAGCGGCCATCAAAGAAATAGAAGAGTATCGTGCGCAGTGTCTCAGAAATGGCACTGGTTACTACGACTCGTTCAAAAAGAAGCAACATAGAACAGACTTTGATGCTAACCTTAACAGGCTGAAGCTGGCAGGCTGGTTCGACGAAATCATAACGATGATCAGCAAGGATGAGTTACCGGACGATTTCCAGTGTAGTGAAGTGTGGATAAGATTGGGCACTCACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGGAAAAAACGAAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGGTTGGAAGAAAATAATGTGATTCAACAGCAGCAGCCATCCCCTACAGGCTCTGATCAGCCCACGATGCTCACTCAAGACTCCTGTCTCTGGGCTCATGTTGAAGAAATTGCATGTTTAACGCTTGCTAATAATGCAGCGGGTTATGAAAACTCCATAGCAGGATTGGAAAAGTCACTGAGGCCTTTGATCGATTCCAATGGTTTGTCTATGGAAGAACTTGTGGCTGGCAACTCTACCTTCAACCGTGTGGTCAAGCGGTTGTGGGAAAACATGACTCCACTGCAGAAATCAACCTCTCCCATCTCCGATGTTATTGGCAGGCACCCAGAACTGATGAACTAATCATGTAGATGATGTGAGTAGCCATTGCACAAGTAGTACATATTAGAGCAGTCTTGCTGTTTCTGTTGCTTTCTATACATTAGAACAAAGGTATTTCTCTTCACAATATCTTAAAGTTAAGATCAGCACTCACTCACATATATATAATGAGTACTGGGATGAAATAGTTTTATGGTTTTTGTATGAAATGGTTTTTATAAGTACTTATTTGAGTAGTCTTGTTATTTCTGTTGCATTATGTACACAAGGACTAAGATATATCTCCACTCTGTTGATGCTAAAATCAGGACTCATTCACATGTATATTATGAGTAGTACTGGTTAGAAAATTCTTGTATTTCTATTGCCAATGTATACAAGGACTAAA

Fln Alignment:

AllPine_a_c14826___TRLMARSE-FFCSENLLGACNLSRNVYRSVGDDPSYLRADLNETTVAIAFHGILDTHVFQATATKFGECQSGFLEWLKDGNNQPAFLHQGSLTRFHNLLNNPRFQEEVLLEYERGKNVLFTGHSMGGAIAALATLWMLDKHQQQHPGKPKSFFCITFGFPLIGDETLARGVRRKGWTDQFCHVVSGRDVISRVLLAPSISVSEALESFLPYLKRYLENAGDLHGSTDTPMEEALPQGSAEFVSTVLQYCSAVANYNSATNMNPNNPLMAAVRPLVKLSPYRPFGHYLFCSKRGGIWIENHFAVFSFLYYALQFSDAALQISDASCDEFILEHVGYSNSLPSVLQNIVKLNELSEIPLSETGSNYQDSRTIQLEELGLGIQNCPARLALRAAGQVSKQQRENRSKLENEVKGXXXXXXXXXXXYRAQCLRNGTGYYDSFKKKQHRTDFDANLNRLKLAGWFDEIITMISKDELPDDFQCSEVWIRLGTHYRLLVEPLDIANYYRLGKNEDSGPYLRNARPRRYTILQKWLEENNVIQQQQPSPTGSDQPTMLTQDSCLWAHVEEIACLTLANNAAGYENSIAGLEKSLRPLIDSNGLSMEELVAG--NSTFNRVVKRLWENMTPLQKSTSPISDVIGRHPELMN
A9NVM4_______________SRLMDGSQPLFSDSSLLGFCKLSHSFYRSGGDDPSYLRANISNDTVAFAFRGILDPRDFQATASKFGDSP---LEWMKDGNNQSASVHQGSLKQFLHLWNTSRLQEEARQEYEGGKTVVFTGHSMGGGIASLAALWMLNSQQQ--PGKPKSVFCITFGFPLIGDGTLARIVRRKGWTDQFCHVVLGHDVFSRVLLAPCISVREPLESLLPYLKRYPENVGDLLGSTDTTMEEALPEGSAELVSTVLQHSSAIANYSSATNMSPNNPLMAAVKSLVKLSPYRPFGHYVFCSRSGGIRTENHFAVLSILYYTLQ-------ISDGNCEEFILEHVGYGNILPSALQNTVKLNELSDLPLSEAGSNYQDSRTAQLEALGLGIQNCPARLSLRAAGQVLKQQRENVPKLENEVRGKIETAINEIEEYRRQCFRNGIGYYDSFKNKQNRSDFDANLNRLKLAGWWDEIIPMVDKDELPEDFQCSEEWITLGTHYRLLVEPLDIANYYRLGKNEDSGPYLKNGRPRRYTTLQKWLKEIEVTKQLQPSPTGIDQPTVLTQDSCLWAHVEEIACLMRPNNVRDQENLVAELENSVKALIGSNGLSMEELVAGNCNSTFNTVVKWLWTNMNAEKKASSPISYIIGRHPELIN

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
67	66		33		0.997452
99		33		66	0.997452
133		60		40	1.0
189	71		28		1.0
192	28		71		1.0
194		66	33		1.0
200	28			71	1.0
232	20		80		0.995493
238	80			20	0.995493
239			20	80	0.995493
240		80	20		0.995493
241	20			80	0.995493
245		80		20	0.995493
519			80	20	0.995493
713	12		87		0.992554
717		87		12	0.992554
888	11			88	0.923564
891	88		11		0.991528
892	88		11		0.991528
1457	75		25		1.0
1579		33	66		1.0
1595		14		85	0.993533
1687	20		80		0.995493
1760			20	80	0.995493
1761	80		20		0.995493
1762		80	20		0.995493
1789	16		83		0.994512
1790		83		16	0.994512
1791		83	16		0.994512
1792			16	83	0.994512
1793			16	83	0.994512
1800	83		16		0.994512
2205	91			8	0.999807
2391		33		66	0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain