SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96215

Length: 290 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene96215
TATACATGGAACAGAGGATGATATAGTCAACATGTCACATGGAAAGGCTCTATACAAGCTATCTACAGAACCGTATAAACCTTTGTGGGTCAATGGAGGTGGTCACTGCAACCTTGAACTTTACCCCGAGTACTTCCAGCATTTGAGGAAATTTATCCAAGAACTGGAAAACTCAGAGAAAATTAAATTGAATCAGATTCAGAATAGTCTTCAACGACCACCGTGTAACAAGTTCTTTAGTGTCTTGTGTATGGCTGATCTGTGCCAACGCTAAAACTGGATGGGATTCT

Ace file of the UniGene sp_v3.0_unigene96215 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha/beta-hydrolase-like protein [Arabidopsis thaliana] gb\|AEE31446.1\| alpha/beta-hydrolase-like protein [Arabidopsis thaliana]	-	-	8.0e-20	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Protein bem46, putative	-	-	4.838e-20	-

Source	Gene names
Sma3	AT4g24760; AT4g31020; At1g32190; At2g24320; At3g30380; At4g24760; At4g31020; At5g14390; F18O22_180; F22K18.40; F3C3.3; F6I18.70; GSVIVT00007993001; GSVIVT00011539001; GSVIVT00015672001; GSVIVT00020607001; GSVIVT00021156001; GSVIVT00038105001; OJ1004_E04.1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Phospholipase/carboxylesterase/thioesterase	IPR003140	-	-
Sma3	Sulphate transporter	IPR011547	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G32190.1	alpha/beta-Hydrolases superfamily protein chr1:11593059-11595731 REVERSE LENGTH=422	1.0e-25	56%
RefSeq	Arabidopsis thaliana	NP_001077642.1	alpha/beta-hydrolase-like protein [Arabidopsis thaliana]	1.0e-25	56%
RefSeq	Populus trichocarpa	XP_002308387.1	predicted protein [Populus trichocarpa]	2.0e-24	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV43

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 83 aas, your sequence is shorter than subject: 91 - 384

Fln protein: IHGTEDDIVNMSHGKALYKLSTEPYKPLWVNGGGHCNLELYPEYFQHLRKFIQELENSEKIKLNQIQNSLQRPPCNKFFSVLCMADLCQR*

Protein Length: 92

Fln nts: TATACATGGAACAGAGGATGATATAGTCAACATGTCACATGGAAAGGCTCTATACAAGCTATCTACAGAACCGTATAAACCTTTGTGGGTCAATGGAGGTGGTCACTGCAACCTTGAACTTTACCCCGAGTACTTCCAGCATTTGAGGAAATTTATCCAAGAACTGGAAAACTCAGAGAAAATTAAATTGAATCAGATTCAGAATAGTCTTCAACGACCACCGTGTAACAAGTTCTTTAGTGTCTTGTGTATGGCTGATCTGTGCCAACGCTAAAACTGGATGGGATTCT

Fln Alignment:

AllPine_a_c14798___IHGTEDDIVNMSHGKALYKLSTEPYKPLWVNGGGHCNLELYPEYFQHLRKFIQELENSEKIKLNQIQNSLQR
A9NV43_______________IHGTSDEVVDCSHGKQLWDLCKEKYEPLWLKGGSHCNLELYPDYIRHLRKFISTVEKSPVLR-NSSRRSTDR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
109	16			83	0.994513
111			16	83	0.994513
211	25		75		0.996473
213	25			75	0.996473
214		25		75	0.996473
215		50		50	1.0
219		66		33	0.997452
221	33		66		0.997452
223		33		66	0.997452
225	33	66			0.997452
227		33	66		0.997452
230		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain