SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene96122

Length: 808 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene96122 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calmodulin-binding protein-like protein [Arabidopsis thaliana] dbj\|BAB02602.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE75381.1\| calmodulin-binding protein-like protein [Arabidopsis thaliana]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Calmodulin binding protein, putative	-	-	1.088e-17	-

Source	Gene names
Sma3	AT4g33050; At2g26190; At3g13600; At3g52870; At3g58480; At4g33050; B1114B07.32-1; CAM; F14P22.70; F26P21.170; F8J2_40; GSVIVT00016534001; GSVIVT00021647001; GSVIVT00024780001; GSVIVT00025453001; GSVIVT00032188001; GSVIVT00034127001; GSVIVT00034409001; GSVI

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	polar nucleus fusion	GO:0010197	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	FAR1 DNA binding domain	IPR004330	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13600.1	calmodulin-binding family protein chr3:4445102-4447383 FORWARD LENGTH=605	55%
RefSeq	Arabidopsis thaliana	NP_187969.1	calmodulin-binding protein-like protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002309213.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
577		33		66	0.997452
632	40		60		1.0
644			20	80	0.995493
645		20		80	0.995493
650	80		20		0.995493
654		20		80	0.995493
655			20	80	0.995493
656	20			80	0.995493
657		20		80	0.995493
658			80	20	0.995493
670	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain