SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95984

Length: 503 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene95984
GAAGTTGAGACAGCGGACGAGCAAAGAGATCCGGAAGCGGGTTTACATCTGCCGGAGCCGAGCTGCGTGCACCATGATCCTTCCAGGGCGTTAGGCGACCTTACGGGCATCAAGAAACACTTTTGTCGGAAGCACGGCGAGAAGAAATGGAAGTGCGACAAGTGTTCTAAGCGTTATGCGGTTCAGTCCGACTGGAAGGCCCATTCCAAGACCTGCGGCACCAGAGAATATCGCTGCGATTGCGGTACTCTCTTTTCCAGGAGAGATAGTTTTATAACACACAGGGCCTTCTGTGATGCTTTGGCTGAAGAAAGTGCGAGAGTTACAGTGAATAATACCGAACCTGTTGCAACTAGGACGACGACCAATTCTTCATCCGACGACGGTCCTAATCCGTGCCCGTGTCCGCCGGATTCTAATAAGGTCTCCATTTCTTCAACAGGCGGTGCCGTTGCTCCGCCTCCGCTCTCGGCTGCGTGGGGGGTCAAGCACCGAGCGGGGGC

Ace file of the UniGene sp_v3.0_unigene95984 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	Nucleic acid binding protein, putative	-	-	5.118e-32	-

Source	Gene names
Sma3	12.EGGPLANT.6; 12.PETUNIA.6; 12.POTATO.11; AT4g02670; At1g03840; At1g14580; At1g25250; At1g55110; At1g68130; At2g01940; At2g02070; At2g02080; At2g02080/F5O4.15; At3g13810; At3g45260; At3g50700; At4g02670; At5g03150; At5g44160; At5g60470; At5g66730; B1066G

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	regulation of cell division	GO:0051302	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G50700.1	AtIDD2, IDD2 indeterminate(ID)-domain 2 chr3:18840945-18842829 FORWARD LENGTH=452	93%
RefSeq	Arabidopsis thaliana	NP_190639.1	indeterminate-domain 2 protein [Arabidopsis thaliana]	93%
RefSeq	Populus trichocarpa	XP_002327696.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP08

Fln msg: Distance to subject end: 381 aas, your sequence is shorter than subject: 167 - 698

Fln protein: EVETADEQRDPEAGLHLPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARVTVNNTEPVATRTTTNSSSDDGPNPCPCPPDSNKVSISSTGGAVAPPPLSAAWGVKHRAG

Protein Length: 168

Fln nts: GAAGTTGAGACAGCGGACGAGCAAAGAGATCCGGAAGCGGGTTTACATCTGCCGGAGCCGAGCTGCGTGCACCATGATCCTTCCAGGGCGTTAGGCGACCTTACGGGCATCAAGAAACACTTTTGTCGGAAGCACGGCGAGAAGAAATGGAAGTGCGACAAGTGTTCTAAGCGTTATGCGGTTCAGTCCGACTGGAAGGCCCATTCCAAGACCTGCGGCACCAGAGAATATCGCTGCGATTGCGGTACTCTCTTTTCCAGGAGAGATAGTTTTATAACACACAGGGCCTTCTGTGATGCTTTGGCTGAAGAAAGTGCGAGAGTTACAGTGAATAATACCGAACCTGTTGCAACTAGGACGACGACCAATTCTTCATCCGACGACGGTCCTAATCCGTGCCCGTGTCCGCCGGATTCTAATAAGGTCTCCATTTCTTCAACAGGCGGTGCCGTTGCTCCGCCTCCGCTCTCGGCTGCGTGGGGGGTCAAGCACCGAGCGGGGGC

Fln Alignment:

AllPine_a_c14215___PEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARVTVNNTEPVATRTTTXXXXXXXXXXXXXXXXXNKVSISSTGGAVAPPPLSAAWG
B8LP08_______________PEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARVTVNNTEPVATRTTTNSSSDDGPNPCPCPPDSHKVSISSTGGAVAPPPLSAGWG

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
225	20			80	0.995493
228			40	60	1.0
233	80	20			0.995493
236	60		40		1.0
237	60	40			1.0
239	40			60	1.0
241			40	60	1.0
242		60	40		1.0
245	40			60	1.0
247		60	40		1.0
248	40			60	1.0
249		40	60		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain