SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95876

Length: 346 nt

UniGene Fasta

>sp_v3.0_unigene95876
CGTCGTGACCTTGGCTGTCACTCATTGGGTTTCCAGCGGCGACGTTGACTCCGTACTTCCCGTTACTGGAACCAGGACGTCAATCAATCATCTGAGTCTTCCCATTACAATTCCATGGTATCCATGGTATCTCAATAATCAGACGGTCGGAGGATGGACTGAAGCATATGAAGGGCTTACCTACGCAACCGTAAGAGGGGCTGGCCATTTTGTTCCACTTTTCCAACCTGAAAGGGCGTTAAAACTTTTCCAATCATTCATAATGGGGCATAACCTACCAAGCACAGTCCCAATCAGCAGCTGAGTCGATCACATCTCGTAATTGCTGTTTGCGTGTGATTCAGTC

Ace file of the UniGene sp_v3.0_unigene95876

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative serine carboxypeptidase II [Arabidopsis thaliana]	-	-	2.0e-28	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Serine carboxypeptidase, putative	-	-	1.021e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	1.569e-22	-
Sma3	Carboxypeptidase D.	EC:3.4.16.6	-	1.49e-28	-

Source	Gene names
Sma3	AP7_B10.1; AT4G30810; At1g11080; At1g61130; At2g24000; At2g24010; At2g35770; At2g35780; At3g02110; At3g63470; At4g30610; At4g30810; B1140D12.11; BRS1; CBP2; CXP; ECS1; F11P17.14; F17I23.50; F1C9.10; F6I18.280; GSVIVT00017138001; GSVIVT00017145001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	extracellular space	GO:0005615	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G30610.1	BRS1, SCPL24 alpha/beta-Hydrolases superfamily protein chr4:14944219-14948391 FORWARD LENGTH=465	1.0e-35	67%
RefSeq	Arabidopsis thaliana	NP_194790.1	carboxypeptidase D [Arabidopsis thaliana]	2.0e-35	67%
RefSeq	Populus trichocarpa	XP_002325127.1	predicted protein [Populus trichocarpa]	8.0e-35	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLR6

Fln msg: your sequence is shorter than subject: 101 - 535

Fln protein: VVTLAVTHWVSSGDVDSVLPVTGTRTSINHLSLPITIPWYPWYLNNQTVGGWTEAYEGLTYATVRGAGHFVPLFQPERALKLFQSFIMGHNLPSTVPISS*

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGGTTTCCAGCGGCGACGTTGACTCCGTACTTCCCGTTACTGGAACCAGGACGTCAATCAATCATCTGAGTCTTCCCATTACAATTCCATGGTATCCATGGTATCTCAATAATCAGACGGTCGGAGGATGGACTGAAGCATATGAAGGGCTTACCTACGCAACCGTAAGAGGGGCTGGCCATTTTGTTCCACTTTTCCAACCTGAAAGGGCGTTAAAACTTTTCCAATCATTCATAATGGGGCATAACCTACCAAGCACAGTCCCAATCAGCAGCTGA___GTCGATCACATCTCGTAATTGCTGTTTGCGTGTGATTCAGTC

Fln Alignment:

AllPine_a_c13936___SGDVDSVLPVTGTRTSINHLSLPITIPWYPWYLNNQTVGGWTEAYEGLTYATVRGAGHFVPLFQPERALKLFQSFIMGHNLP
B8LLR6_______________SGDTDTVVPVTSTRLSINELKLPIATPWYPW-LNGDEVGGYTVIYKGLTFATVRGAGHEVPAFQPSRALTLFKSFLAGKPLP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
272			83	16	0.994512
277	83		16		0.994512
312			83	16	0.994512
330		85		14	0.993537
337		85		14	0.993534

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain