SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95852

Length: 929 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene95852

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MYB-like transcriptional factor MBF1 n=1 Tax=Picea mariana RepID=Q40920_PICMA	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	MYB transcription factor	-	-	2.199e-13	-

Source	Gene names
Sma3	At1g09540; At1g18570; At1g18570/F25I16_4; At1g22640; At1g35515; At2g16720; At3g02940; At3g13540; At4g01680; At4g01680/T15B16.4; At4g09460; At4g34990; At4g38620; At5g16770; At5g35550; B1267B06.13; C; C1; DcMYB3-1; DcMYB3-2; DcMYB5; F12K8.1; F13E7.11; F14J9

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	cold acclimation	GO:0009631	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	indole glucosinolate biosynthetic process	GO:0009759	Biological Process	-
Sma3	cinnamic acid biosynthetic process	GO:0009800	Biological Process	-
Sma3	negative regulation of metabolic process	GO:0009892	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	trichome morphogenesis	GO:0010090	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13540.1	ATMYB5, MYB5 myb domain protein 5 chr3:4420239-4421443 FORWARD LENGTH=249	8.96831e-44	73%
RefSeq	Arabidopsis thaliana	NP_187963.1	transcription repressor MYB5 [Arabidopsis thaliana]	9.94922e-44	73%
RefSeq	Populus trichocarpa	XP_002303999.1	predicted protein [Populus trichocarpa]	1.96182e-44	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC04

Fln msg: your sequence is shorter than subject: 308 - 349

Fln protein: KAGLKRCGKSCRLRWLNYLRPCIKRGNITPDEEELIIRMHALLGNRWSIIAGRVPGRTDNEIKNYWNTKLSRKLASRGIDPKTHKFITMDSNNRAGDAFNQFKGDAFNQFKAEKPYYCLQRSQYLVANTSQSTDLVIPHVHSLKGDLKVQHTENESSSRSLPVESHNTNISISSSECYNYTPGDSGECASLIGSSDSVEAKCDSRDLHHNGFHEKHDEFAEYDVFNFFDVSNAENEICCNDEEWVDEEDTDQFVKKNQAPPQSGHGDKEIDAEENDNLGSSCVNPHDFSHSANSDITVMSWELAFWY*

Protein Length: 309

Fln nts: GAAAGCTGGGCTGAAAAGGTGTGGAAAGAGCTGCAGATTGCGTTGGTTAAACTACCTTCGGCCATGTATCAAGAGAGGAAATATTACGCCCGATGAAGAAGAGCTTATTATCAGAATGCACGCCCTTCTTGGCAACAGATGGTCAATAATCGCAGGGAGAGTCCCTGGCAGAACAGACAATGAAATAAAGAACTACTGGAATACCAAATTAAGCAGAAAACTTGCTAGCAGAGGGATTGATCCCAAAACCCATAAATTCATCACGATGGATAGCAATAACAGAGCTGGTGATGCTTTCAACCAGTTTAAAGGTGATGCTTTCAACCAGTTTAAAGCTGAGAAACCATATTACTGCTTACAGAGATCACAATATTTGGTAGCCAATACTAGTCAGTCAACGGATCTGGTGATTCCCCATGTTCACAGTCTGAAGGGAGATTTGAAAGTGCAACATACAGAAAATGAAAGCTCTAGCAGATCATTACCAGTTGAATCCCACAATACCAATATTTCCATCTCCTCTAGTGAATGTTATAATTATACACCAGGAGATTCAGGTGAGTGCGCGTCTCTGATTGGTAGTTCAGATTCAGTGGAGGCAAAATGTGATAGTAGAGACCTGCATCACAATGGCTTCCACGAGAAACATGATGAGTTTGCAGAATATGATGTATTCAATTTCTTCGACGTTAGCAATGCGGAGAATGAAATTTGTTGCAACGATGAGGAATGGGTAGATGAAGAAGACACCGACCAATTTGTGAAGAAAAATCAGGCACCACCTCAATCTGGGCATGGGGACAAGGAAATTGATGCAGAGGAAAACGATAACTTGGGATCCTCATGCGTGAATCCTCATGATTTCTCTCATTCTGCAAACAGTGACATTACTGTCATGTCATGGGAATTAGCTTTCTGGTATTAG___TTTA

Fln Alignment:

AllPine_a_c13851___KAGLKRCGKSCRLRWLNYLRPCIKRGNITPDEEELIIRMHALLGNRWSIIAGRVPGRTDNEIKNYWNTKLSRKLASRGIDPKTHKFITMDSNNRAGDAFNQFKGDAFNQFKAEKPYYCLQRSQYLVAN------TSQSTDLVIPHVHSLKGDLKVQHTENESSSRSLPVESHNTNISISSSECYNYTPGDSGECASLIGSSDSVEAKCDSRDLHHNGFH--EKHDEFAEYDVFNFFDVSNAENEICCNDEEWVDEEDTDQFVKKNQAPPQSGHGDKEIDAEENDNLGSSCVNPHDFSHSANSDITVMSWELAFWY
D5AC04_______________KAGLRRCGKSCRLRWLNYLRPCIKRGNITADEEELIIRMHALLGNRWSIIAGRVPGRTDNEIKNHWNTKLSRKLASRGIDPKTHKFITTDSSNRA--------GDRFDQFQSEKQYYCSQRSQHLVSNVPKVVKVGRSTDLVIPHVHNLKADLKVQETENKSSSRSLPVESHNTNISMSSDECYNYTPADSAECASLISSSDSVEAKCDSRDLHDNGCHWNEKHDDFPEYDVFNFFDVSNAENEICCNDDYWVDEGSADQFVKQKQAPPQSGQWDKQIDVEGKDNLGYPCMNAHDLSDHANNDVTVMSWEAALWY

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
591	85		14		0.993533
641			14	85	0.993533
645		71		28	1.0
768	20			80	0.995493
769		20	80		0.995493
771	80			20	0.995493
773	60		20	20	0.992564
785	50	50			1.0
786		75		25	0.996473
803	50		50		1.0
812		25	75		0.996474
833		33	66		0.997452
854	33		66		0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain