SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95782

Length: 331 nt

UniGene Fasta

>sp_v3.0_unigene95782
TCCAATATTTTACTGTCAATATCTCCCTGTTTAAATGCTCCGATTGAAAATGACAGCGCTGCGAGCTCCATTCTATTGTGAATTCTAGTACTGGACCCTCGATTGGAACAATTACAGCACAGAGCCGCCAGTCTGCAGGAGAAAGAACTGGGTTTTCTTTCGTGGATTGCTCAATTACAGGAACAGGGCTTGTATACCTAGGCCGGGCATGGGGGTCGTATTCTCGAGTTGTATTTTGCTACACAGAAATGGCAGATATAATCGTTCCAGAAGGGTGGTCAGACTGGAACGATCCTTCCAAGGATCAGTGAGTTTATACCAGCCTTCAATT

Ace file of the UniGene sp_v3.0_unigene95782

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectinesterase n=1 Tax=Ricinus communis RepID=B9S0A6_RICCO	-	-	8.0e-22	56%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Pectinesterase	-	-	1.483e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectinesterase.	EC:3.1.1.11	-	1.063e-37	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	1.063e-37	%
Sma3	Starch and sucrose metabolism	00500	1.063e-37	%
Sma3	Metabolic pathways	01100	1.063e-37	%

Source	Gene names
Sma3	ARATH15; ARATH2; ARATH53; At1g05310; At2g36710; At5g19730; B1331F11.6; F13K3.11; GSVIVT00000569001; GSVIVT00016652001; OSJNBa0072I06.24; Os01g0743200; Os07g0607400; Os09g0571100; OsI_03695; OsI_28228; OsI_32473; OsJ_03413; OsJ_26414; OsJ_30426; P0439E07.2

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	aspartyl esterase activity	GO:0045330	Molecular Function	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G19730.1	Pectin lyase-like superfamily protein chr5:6670562-6673202 FORWARD LENGTH=383	4.0e-27	53%
RefSeq	Arabidopsis thaliana	NP_197474.1	pectinesterase [Arabidopsis thaliana]	6.0e-27	53%
RefSeq	Populus trichocarpa	XP_002326223.1	predicted protein [Populus trichocarpa]	4.0e-26	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2L6

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 43 aas, your sequence is shorter than subject: 103 - 357

Fln protein: QYFTVNISLFKCSD*K*QRCELHSIVNSSTGPSIGTITAQSRQSAGERTGFSFVDCSITGTGLVYLGRAWGSYSRVVFCYTEMADIIVPEGWSDWNDPSKDQ*

Protein Length: 104

Fln nts: TCCAATATTTTACTGTCAATATCTCCCTGTTTAAATGCTCCGATTGAAAATGACAGCGCTGCGAGCTCCATTCTATTGTGAATTCTAGTACTGGACCCTCGATTGGAACAATTACAGCACAGAGCCGCCAGTCTGCAGGAGAAAGAACTGGGTTTTCTTTCGTGGATTGCTCAATTACAGGAACAGGGCTTGTATACCTAGGCCGGGCATGGGGGTCGTATTCTCGAGTTGTATTTTGCTACACAGAAATGGCAGATATAATCGTTCCAGAAGGGTGGTCAGACTGGAACGATCCTTCCAAGGATCAGTGAGTTTATACCAGCCTTCAATT

Fln Alignment:

AllPine_a_c13688___QRCELHSIVNSSTGPSIGTITAQSRQSAGERTGFSFVDCSITGTGLVYLGRAWGSYSRVVFCYTEMADIIVPEGWSDW-NDPSKDQ
A9P2L6_______________KHCELHSIAKE-----FGSIAAQGREKPYEKTGFAFVHCTVTGTGPLYIGRAMGQYSRIVYAYTYFDDIVAREGWDDWGHQTTKDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain