SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95737

Length: 1594 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene95737 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00026, Asp, Eukaryotic aspartyl protease	-	-	1.0e-32	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Sma3	Nepenthesin.	EC:3.4.23.12	-	3.185e-08	-

Source	Gene names
Sma3	At1g09750; GSVIVT00015118001; GSVIVT00030908001; NEP1; OsI_00323; OsJ_25435; PHYPADRAFT_118772; PHYPADRAFT_121432; POPTRDRAFT_551646; RCOM_1039190; VITISV_043237; nep1; nep2;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	proton transport	GO:0015992	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Chloroplast envelope membrane protein, CemA	IPR004282	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRL7

Fln msg: atg_distance in limit (1-15): atg_distance = 16,

Fln protein: MSGVVEASTANCRSSVKPLNRKVGNWKRSVSFPLMHLYSECSPFRPPNRTWESLISERIKADANRLRFLKRSMSNSRSSNIDQEDDANVPVMPGSGAYIINVGFGTPKQSMYTLIDTGSDVAWIPCAQCQGCDSTAASPFDSTLSSSYSSLDCNSQACQEAPKANCGENDECDVQLSYGDGSVVEGPLSSDAITLGAQSLPNFSFACAESVSGLNQNQPGLMGLGGGPLSLLNQPTTELFGGTFSYCLPSLQASSASSGSLVLGKEAALSSPGLKFTTLIKDPSNPTFYFVNLNGISVGDTTVPVPATSNGGGGGTVIDSGTTITYLVDSAYTALRDAFRSHIPNTQPTSSGGFDTCYDLSSSSVDVPTITLHFDGSVDLDLPKENILVSPVSGLACLAFSSSDSLSISFSILGNVQQQNLRVVFDVPNSQVGFAQESCTSA*

Protein Length: 444

Fln nts: CACGAGGGCTTGCTGTACTA_-_ATGTCTGGAGTGGTCGAGGCCTCCACTGCGAACTGTCGGAGTAGTGTCAAACCTTTGAATAGAAAAGTGGGGAACTGGAAACGTAGCGTGAGCTTTCCACTTATGCATCTTTATTCAGAGTGTTCACCTTTCCGACCTCCAAACAGGACGTGGGAAAGCTTGATATCTGAAAGAATTAAAGCCGACGCCAATCGCCTCCGATTTTTGAAGCGCTCCATGTCGAATTCTCGTTCATCCAATATCGACCAAGAAGACGACGCTAACGTCCCTGTTATGCCAGGGTCCGGAGCGTACATAATAAATGTGGGTTTTGGCACGCCCAAGCAAAGCATGTATACGCTTATAGATACGGGTAGCGATGTTGCTTGGATTCCGTGCGCACAGTGCCAAGGCTGCGACTCGACTGCCGCTTCACCTTTCGACTCTACATTGTCTTCGTCCTATAGTTCCTTAGACTGCAATTCACAGGCATGTCAGGAAGCTCCTAAAGCGAATTGCGGGGAAAATGACGAATGTGATGTGCAACTGTCGTATGGAGATGGCTCTGTTGTGGAGGGTCCACTTTCTTCCGACGCGATCACTCTTGGCGCTCAATCTCTTCCTAATTTCTCATTCGCTTGTGCGGAGTCCGTAAGCGGATTAAATCAAAACCAACCGGGGCTGATGGGATTGGGAGGTGGACCACTTTCGTTGCTGAATCAGCCCACCACAGAATTATTCGGCGGAACGTTTTCTTACTGTCTTCCCAGCTTGCAGGCATCGTCAGCATCTTCGGGATCCCTTGTGCTTGGGAAGGAAGCTGCTCTTTCCTCCCCAGGTTTGAAATTTACGACACTGATAAAAGATCCTTCAAACCCGACATTTTATTTCGTGAACTTGAACGGAATCAGCGTTGGTGACACGACCGTCCCTGTCCCCGCAACGAGTAATGGCGGCGGGGGAGGAACGGTCATCGACTCGGGAACAACGATCACCTATCTCGTTGATTCTGCTTACACAGCTCTCAGAGACGCTTTTCGCAGCCATATTCCCAATACGCAGCCGACATCATCTGGAGGTTTCGATACTTGTTACGACTTGTCTTCTTCTTCCGTCGACGTTCCCACCATAACGTTACACTTCGATGGTAGCGTGGACCTGGATTTGCCAAAGGAAAATATCCTAGTCAGCCCAGTATCGGGGTTAGCATGCTTGGCTTTCTCGAGTTCTGATTCTCTTTCCATTTCTTTTTCTATCTTAGGAAATGTTCAACAACAGAATTTGCGTGTCGTTTTTGATGTGCCCAATTCTCAAGTTGGATTTGCTCAGGAAAGTTGTACAAGTGCTTGA___TAACGTTTCTTTTGCCCTTCTTCTCTGATACCTCCATCGTCCATTTTCTATGTTTCATCTGCAACTCCCACTTCTATCATTCCTGCCATTAACCGTCTTTTAAATAATGACCTGTCGTATGAAAGCCCAACTGGTGCATAGCTGCGACAGTGCTCTTAATAGTCGTGTATTATTTAGTCCGGTCTTTTTGCTATTTCCTCACTCTTGTTTTATCCTTCGTGTTAATAAAGAATCATATTATCAGC

Fln Alignment:

AllPine_a_c13602___MSGVVE-ASTANCRSSVKPLNRKVGNWKRSVSFPLMHLYSECSPFRPPNRTWESLISERIKADANRLRFLKRSMSNSRSSNIDQEDDANVPVMPGSGAYIINVGFGTPKQSMYTLIDTGSDVAWIPCAQCQGCDSTAAXXXXXXXXXXXXXXXXXSQACQEAPKANCGENDECDVQLSYGDGSVVEGPLSSDAITLGAQSLPNFSFACAESVS-XXXXXXXXXXXXXXXXXXXXXXPTTELFGGTFSYCXXXXXXXXXXXXXXXXGKEAALSSPGLKFTTLIKDPSNPTFYFVNLNGISVGDTTVPVPAXXXXXXXXXXXXXXXXXTYLVDSAYTALRDAFRSHIPNTQPTSSGGFDTCYDLSSSSVDVPTITLHFDGSVDLDLPKENILVSPVSGLACLAXXXXXXXXXXXXXLGNVQQQNLRVVFDVPNSQVGFAQESCTS
B8LRL7_______________MCGVAEIAPGLNCRSSDKILNRKVGKRSHSVSFPLIHIYSECSPFRPPNRTWESLMSEKIRGDANRLRFLKRT---SRSSK--QDANANVPVRSGSGEYIIQVDFGTPKQSMYTLIDTGSDVAWIPCKQCQGCHST-APIFDPAKSSSYKPFACDSQPCQEI-SGNCGGNSKCQFEVSYGDGTQVDGTLASDAITLGSQYLPNFSFGCAESLSEDTSPSPGLMGLGGGSLSLLTQAPTAELFGGTFSYC---LPSSSTSSGSLVLGKEAAVSSSSLKFTTLIKDPSIPTFYFVTLKAISVGNTRISVPGTNIASGGGTIIDSGTTITHLVPSAYTALRDAFRQQLSSLQPTPVEDMDTCYDLSSSSVDVPTITLHLDRNVDLVLPKENILITQESGLACLA----FSSTDSRSIIGNVQQQNWRIVFDVPNSQVGFAQEQCAA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1247		10		90	0.90298
1362	88		11		0.923564
1518		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain