SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95712

Length: 517 nt

UniGene Fasta

>sp_v3.0_unigene95712
TTGAAAAATTTTCAGAAATCAGCAAAAGAGTAGCTCCGGAGTAATGTGTTTGAAGTTGGTGGTTATCGATGGTACATCTTAGTATATCCCCAGGGGTGTGATGTCTGTAACCACCTTTCCTTTTTTCTGTGTGTGTCTGACTATGACAAGCTCCTGCCAGGTTGGAGTCATTTTGCTCAATTTACAATTGCTGTAGTGAACAAGGATCCAAAGAAATCTAAATACTCCGATACACTCCATCGATTCTGTAAAAAGGAACATGATTGGGGCTGGAAAAAGTTTATGGAGCTATCGAAAGTATCGGATGGCTTCATTGTGGCAGATATCCTTGTGATTAAGGCTCAAGTTCAGGTTATCAGGGAAAACTCCCATCGCCCATTTCGATGTCTTGATTGCCAGTACAGGAGGGAGTTAGTTCGTGTTTATTTAACTAATGTTGAAGGCATTTGTAGAAGATTTGTGGAAGAAAACGTGAAAGGCTTGGGAAGTTAATAGAGGACAATGGTAGATGGTCTAG

Ace file of the UniGene sp_v3.0_unigene95712

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MATH domain containing protein	-	-	5.0e-19	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%

Source	Gene names
Sma3	AT5G43560; At1g04300; At4g16045; At5g43560; At5g52330; CGL82; CHLREDRAFT_132449; F19P19.26; GSVIVT00020158001; LOC_Os12g40520; MICPUN_69054; OSTLU_4022; Os01g0775300; Os05g0508700; Os12g0597100; OsI_03935; OsI_20565; OsI_38981; OsJ_03647; OsJ_19142; OsJ_3

Source	InterPros	Term	Type	e value	Identity
Sma3	MATH	IPR002083	-	0.0	-
Sma3	TRAF-type	IPR013322	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G43560.1	TRAF-like superfamily protein chr5:17501043-17505526 FORWARD LENGTH=1055	71%
RefSeq	Arabidopsis thaliana	NP_171926.3	MATH domain-containing protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002312577.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSM8

Fln msg: your sequence is longer than subject: 164 - 123

Fln protein: LKNFQKSAKE*LRSNVFEVGGYRWYILVYPQGCDVCNHLSFFLCVSDYDKLLPGWSHFAQFTIAVVNKDPKKSKYSDTLHRFCKKEHDWGWKKFMELSKVSDGFIVADILVIKAQVQVIRENSHRPFRCLDCQYRRELVRVYLTNVEGICRRFVEENVKGLGS*

Protein Length: 165

Fln nts: TTGAAAAATTTTCAGAAATCAGCAAAAGAGTAGCTCCGGAGTAATGTGTTTGAAGTTGGTGGTTATCGATGGTACATCTTAGTATATCCCCAGGGGTGTGATGTCTGTAACCACCTTTCCTTTTTTCTGTGTGTGTCTGACTATGACAAGCTCCTGCCAGGTTGGAGTCATTTTGCTCAATTTACAATTGCTGTAGTGAACAAGGATCCAAAGAAATCTAAATACTCCGATACACTCCATCGATTCTGTAAAAAGGAACATGATTGGGGCTGGAAAAAGTTTATGGAGCTATCGAAAGTATCGGATGGCTTCATTGTGGCAGATATCCTTGTGATTAAGGCTCAAGTTCAGGTTATCAGGGAAAACTCCCATCGCCCATTTCGATGTCTTGATTGCCAGTACAGGAGGGAGTTAGTTCGTGTTTATTTAACTAATGTTGAAGGCATTTGTAGAAGATTTGTGGAAGAAAACGTGAAAGGCTTGGGAAGTTAA___TAGAGGACAATGGTAGATGGTCTAG

Fln Alignment:

AllPine_a_c13530___LKNFQKSAKE*LRSNVFEVGGYRWYILVYPQGCDVCNHLSFFLCVSDYDKLLPGWSHFAQFTIAVVN-KDPK
A9NSM8_______________IEHFSSLDAERHYSDIFTVGGHKWRLLIFPKGNNV-DYLSIYLDVPDSATLPHGCSKYAEFSLAVVNLTDPQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
310		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain