SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95651

Length: 1418 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene95651

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beta-ketoacyl-ACP synthetase I-2 [Glycine max]	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Beta-ketoacyl-ACP synthase II	-	-	1.001e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-ketoacyl-acyl-carrier-protein synthase I.	EC:2.3.1.41	-	1.182e-29	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		1.182e-29	%
Sma3	Metabolic pathways	01100		1.182e-29	%

Source	Gene names
Sma3	AT1G74960; At1g74960; At2g04540; At5g46290; B1056G08.109; CHLREDRAFT_139619; CHLREDRAFT_181037; CHLREDRAFT_205887; CwKASII1; CwKASII2; F25A4.7; FABFa; FABFb; GSVIVT00003432001; GSVIVT00006722001; GSVIVT00006723001; GSVIVT00016391001; GSVIVT00025980001; GS

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase activity	GO:0004315	Molecular Function	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	unsaturated fatty acid biosynthetic process	GO:0006636	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Beta-ketoacyl synthase	IPR000794	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Beta-ketoacyl synthase, N-terminal	IPR014030	-	-
Sma3	Beta-ketoacyl synthase, C-terminal	IPR014031	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46290.3	KASI 3-ketoacyl-acyl carrier protein synthase I chr5:18774439-18776629 REVERSE LENGTH=489	72%
RefSeq	Arabidopsis thaliana	NP_199441.1	3-oxoacyl-[acyl-carrier-protein] synthase I [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002299456.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABC3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 358 - 481

Fln protein: GDPELWNNSGFSNYMVCLKRSQEINRDCLVLT*LFYSTQVDKRRVGVLVGSAMGGLTVYSVGIETLLHKGFRKMTPYFIPYIIPNMGSALLAIDTGVMGPTYSISTACATANYCLYSAANHIRRGEADIMLAGGTDASILPAGVGGFIACNALSQRNDDPQTASRPWDRDRDGFVVGEGAGMLVMESLEHARKRGAPIIAEYLGGAITCDAYHMTNPHPDGFGVSMCIRKCLQDAGVSPEEVNYINAHATSTQAGDLREVKAIKNVFKDTSGIKMNGTKSMIGHTLGAAGALEAIATIKAITTGWLHPTINQFNTEPDVTIDTVPNIKKQHEVHVGISNSFGFGGHNSVVAFAPFNP*

Protein Length: 359

Fln nts: ATGGGGACCCTGAGCTTTGGAATAATTCTGGCTTCTCTAATTACATGGTATGTCTGAAAAGGAGTCAAGAGATAAACAGAGACTGTCTTGTTCTAACATGACTGTTCTATTCCACACAGGTAGACAAGAGGCGTGTAGGGGTGCTGGTGGGGTCGGCTATGGGCGGCCTTACAGTCTACTCTGTTGGAATAGAGACTCTTTTACACAAGGGTTTCAGGAAGATGACACCATATTTTATTCCTTATATCATTCCAAACATGGGATCTGCATTGTTGGCAATTGATACGGGAGTAATGGGTCCGACCTACTCAATTTCAACAGCATGTGCAACAGCAAATTACTGCCTGTATTCAGCTGCAAATCATATTCGCAGAGGTGAAGCAGATATCATGCTTGCAGGTGGCACAGACGCTTCGATTTTGCCGGCTGGTGTAGGTGGATTTATTGCTTGTAATGCCCTTTCACAGAGGAATGATGACCCACAGACAGCTTCCAGACCATGGGACAGAGATCGTGATGGGTTTGTCGTGGGTGAAGGCGCTGGCATGCTGGTTATGGAAAGTCTTGAGCATGCAAGGAAGCGAGGAGCTCCCATAATAGCCGAGTACCTCGGTGGGGCTATCACTTGTGATGCTTATCACATGACGAATCCACATCCTGACGGGTTTGGAGTTTCAATGTGCATTCGGAAATGTTTGCAAGATGCAGGTGTTTCACCAGAGGAGGTCAACTATATCAATGCTCATGCAACATCAACCCAGGCAGGAGATCTGAGAGAGGTTAAAGCTATCAAGAACGTTTTCAAGGATACTTCTGGCATCAAAATGAATGGAACAAAGTCTATGATTGGGCATACTCTTGGTGCTGCGGGTGCACTGGAAGCTATTGCAACCATAAAGGCTATCACCACCGGATGGCTTCACCCCACAATTAATCAATTTAATACCGAGCCTGATGTTACTATTGACACGGTGCCAAATATAAAGAAGCAGCACGAAGTACACGTTGGTATCTCCAACTCTTTTGGATTTGGTGGTCACAACTCAGTGGTAGCATTTGCTCCATTCAATCCTTAA___AGCATGCTATCAACGCCATTTTTTCAAACACTTGCTTTTCTATTGAATTGCCATGAATGGATGCATCCATTAATCTGTGAAGTAGTTATGATTCAGAGAGTCAGAGATTTTTCAACGTTTTCTTATTATCTTACATGAATCAGCTGTAGAGGAAATAATTTGGCTTTTTCATGATTTTTAAATTAGATTTTTAAGACGATTAGTAGCATTGGACAGCGGGAAAAATATCCATATTCAACATCACTGTAATAAGTTAGAGAAAGTAGATTTAAATTTTCAATTTGCTTCTCAGTTGGCTATTATCAGAGAACTTACAAAATCAGTCCTCATATACAAGACATT

Fln Alignment:

AllPine_a_c13353___QVDKRRVGVLVGSAMGGLTVYSVGIETLLHKGFRKMTPYFIPYIIPNMGSALLAIDTGVMGPTYSISTACATANYCLYSAANHIRRGEADIMLAGGTDASILPAGVGGFIACNALSQRNDDPQTASRPWDRDRDGFVVGEGAGMLVMESLEHARKRGAPIIAEYLGGAITCDAYHMTNPHPDGFGVSMCIRKCLQDAGVSPEEVNYINAHATSTQAGDLREVKAIKNVFKDTSGIKMNGTKSMIGHTLGAAGALEAIATIKAITTGWLHPTINQFNTEPDVTIDTVPNIKKQHEVHVGISNSFGFGGHNSVVAFAPFNP
D5ABC3_______________KLDKSRIGVLVGSGIGGLTAYSDGIKALLQKGYKRITPFFIPYTISNMGSALLAIDTGLMGPNYSISTACATANYCLYAAANHIRRGEADIMLAGGTEAGIVPVSVGGFIALRALSHRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVTCDAHHMTDPRSDGLGVSMCIRKSLEDAGVSPEEVNYINAHATSTRAGDLAEVNAIKKVFTNTSSIKMNGTKSMIGHSFGAAGALEAIATIKAITTGWLHPTINQFNTEPDVTIDTVPNVKKQHEVHVGISNSFGFGGHNSVVTFAPFNP

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1132		87		12	0.992554
1206		20		80	0.995493
1207		83		16	0.994512
1209	83			16	0.994512
1213			16	83	0.994512
1214	16			83	0.994512
1215		33		66	1.0
1216		83		16	0.994512
1220			16	83	0.994512
1221			16	83	0.994512
1222	83	16			0.994512
1224		83	16		0.994512
1226		16		83	0.994512
1229	83			16	0.994512
1230		16		83	0.994512
1231	16		83		0.994512
1316	80			20	0.995493
1317	80		20		0.995493
1318	80		20		0.995493
1319	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain