SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95645

Length: 1295 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene95645

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-3-methyladenine glycosylase, putative n=1 Tax=Ricinus communis RepID=B9SWJ1_RICCO	-	-	0.0	75%
FL-Next	sp=DNA-3-methyladenine glycosylase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Sma3	DNA-3-methyladenine glycosylase	-	-	7.054e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-3-methyladenine glycosylase II.	EC:3.2.2.21	-	4.232e-09	-

Source	Gene names
Sma3	At3g12040; GSVIVT00025403001; MAG; MEC18.17; OJ1448_G06.11; Os02g0774500; OsI_09129; OsJ_08564; POPTRDRAFT_835435; RCOM_0278080; T21B14.14; T21B14_115;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	alkylbase DNA N-glycosylase activity	GO:0003905	Molecular Function	-
Sma3	base-excision repair	GO:0006284	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Methylpurine-DNA glycosylase (MPG)	IPR003180	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12040.1	DNA-3-methyladenine glycosylase (MAG) chr3:3835349-3836781 REVERSE LENGTH=254	64%
RefSeq	Arabidopsis thaliana	NP_187811.1	DNA-3-methyladenine glycosylase [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002323332.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q39147

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: QTIHTNITARYPRRHRKCKEPKNMYAEDGPVTVDLMNTNRHSVGAGSRNCEVSEGYKILGPAFFQCDALELAPKLLGKLLRRDDVILQITEVEAYRQNDTACHGRFGITARTAPVFGPGGHAYIYLCYGLHIMLNVVADKEGVGAAVLIRSCAPVSGLETIQHRRGQTTNKPILLTGPGKVGQALGLTTEWSNHPLYTSGGLEVLDGPAPDKILVGPRVGIEYASPEHVQALWRFAIGGSAWISAPRNTLRPA*

Protein Length: 255

Fln nts: ATGGGGACCATGAAATATGCATGGCGGTAAAATGCAATGCAAGCTTAATTATCATGGGCCCAGTCTCCGCAAGGGCAGCCTCAGGAGATCAGCAGATTCCCACTGCAACAATGTCAGAGAAGCTACCCTCAATGCATCCCCAACACTTACTATGGAAATCTCTGAGTGTGTCAAAAAATTGAAGCCTATCTCAGATTTCGCATATAACAAACGATCCACACAAACATTACAGCAAGATATCCCAGGAGACACAGAAAATGCAAGGAGCCCAAAAACATGTACGCAGAAGACGGTCCCGTAACTGTCGATTTAATGAACACCAATAGACATTCAGTAGGGGCTGGAAGTAGAAATTGTGAAGTTTCAGAAGGATATAAAATTTTGGGTCCAGCGTTTTTCCAATGCGATGCGCTGGAATTGGCACCTAAGCTTCTGGGGAAGCTCCTTCGCAGAGATGATGTTATTTTGCAAATTACAGAGGTAGAAGCTTATCGCCAAAATGATACAGCATGTCATGGTCGCTTTGGTATTACAGCACGCACTGCCCCTGTGTTTGGACCAGGAGGCCATGCCTACATCTATCTGTGCTATGGACTTCATATTATGCTTAATGTGGTAGCAGACAAAGAGGGTGTTGGTGCAGCTGTTCTTATTCGTTCCTGTGCTCCTGTTTCTGGTTTGGAGACTATACAACATCGGAGAGGTCAGACAACGAACAAGCCCATTCTACTTACTGGGCCAGGCAAGGTTGGCCAGGCATTAGGCCTTACGACAGAATGGTCAAATCATCCACTTTACACCTCTGGTGGTTTGGAGGTTTTGGATGGACCTGCACCAGATAAGATACTAGTTGGACCAAGAGTAGGGATTGAATATGCATCTCCAGAACATGTTCAAGCTTTATGGAGATTTGCTATTGGAGGAAGTGCTTGGATAAGTGCCCCACGCAACACACTCAGACCTGCCTGA___TTTGATGCATATATTGTTTACTCCTCTCATGGTAACTACAAGCAGGACCTACAGTGTAGTTAAAATGAAGCTCCATGCTCTATTACCACATTCCGGTGAGCATCTGTGGAATCAGATCATCAAACAGGCATTTTGTCCAGAACACGGAGAGATTTCGTTAGTGTTTAGTGCATGGATAGCTACTGAATATATCTTTTGGCCTCCTTGAATGGACATGTATGGAAATTTCTCTGTGTTTGTCAATTGTGATGTGAAAAAGACAAGTCGTTATTTCTGTGGAAGGAAAGCTTGAAACCTTCAGTCACCTGATCGACAAATTAGACATT

Fln Alignment:

AllPine_a_c13339___TNITARYPRRHRKCKEPKNMYAE---DGPVTVDLMNTNRHSVGAGSRNCEVSEGYKILGPAFFQCDXXXXXXXXXXXXXRRDDVILQITEVEAYRQNDTACHGRFGITARTAPVFGPGGHAYIYLCYGLHIMLNVVADKEGVGAAVLIRSCAPVSGLETIQHRRGQTTNKPILLTGPGKVGQALGLTTEWSNHPLYTSGGLEVLDGPAP-DKILVGPRVGIEYASPEHVQALWRFAIGGSAWISAPRNTLRP
Q39147_______________TNVTTRVVLRTRKTNCSKTRAARVRPDYPLT---------------RTTSESE-MKLMPPEFFQIDALDLAPRLLGKFMRRDNVVLRITEVEAYRPNDSACHGRFGVTPRTAPVFGPGGHAYVYLCYGLHMMLNIVADKEGVGAAVLIRSCSPVSGMETIQERRGLKTDKPVLLNGPGKVGQALGLSTEWSHHPLYSPGGLELLDGGEDVEKVMVGPRVGIDYALPEHVNALWRFAVADTPWISAPKNTLKP

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
133	75		25		0.996473
395	75		25		0.996473
583	60		40		1.0
700	66			33	0.997452
701		66	33		0.997452
702	66		33		0.997452
703			33	66	0.997452
760	33		66		0.997452
761		66		33	0.997452
762		66	33		0.997452
763	66		33		0.997452
953		88	11		0.923565
954	88			11	0.923566
957		88		11	0.923564
958	88		11		0.923564
961	88	11			0.923564
962		88		11	0.923564
963	88			11	0.923564
964		88	11		0.923564
965			11	88	0.923564
967	88			11	0.923564
969	88			11	0.923564
976	11	88			0.923564
988	90		10		0.90298
991	90		10		0.90298
993	90		10		0.90298
994	10			90	0.90298
995		10		90	0.90298
996		10	90		0.90298
999			10	90	0.902987
1000	90		10		0.902981
1004		90		10	0.902989
1006	10			90	0.902989

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain