SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95634

Length: 239 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene95634
CGATGGCGACATGGAAGCCTGTAAGGAAATACACTGGTGGTCATAAAGGGGCAGTTTCTTGCTTGATGACATTCCTGGCTTCCTCTGGGGAGACGCTTCTTGTTTCTGGTGCTAGTGATGGGTTACTTGTTCTCTGGAGTGCAGATCATGTGCAAGATTCTCGTGAAATTGCACCAAAACATAGTCTTAAGGCACATGATGGAGGTGTTTTGGCTATTGAGCTTTTAAGAGTTTCAGGT

Ace file of the UniGene sp_v3.0_unigene95634 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	78%

Source	Gene names
Sma3	At5g24710; GSVIVT00033606001; MtrDRAFT_AC149038g7v2; OSJNBb0006H05.18-1; Os01g0653800; OsI_03104; OsJ_02855; PHYPADRAFT_205506; POPTRDRAFT_819144; RCOM_0888260; VITISV_009629;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G24710.1	Transducin/WD40 repeat-like superfamily protein chr5:8459148-8467920 REVERSE LENGTH=1377	9.0e-35	75%
RefSeq	Arabidopsis thaliana	NP_197859.4	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	1.0e-34	75%
RefSeq	Populus trichocarpa	XP_002309040.1	predicted protein [Populus trichocarpa]	4.0e-18	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BGI9

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 79 - 372

Fln protein: MATWKPVRKYTGGHKGAVSCLMTFLASSGETLLVSGASDGLLVLWSADHVQDSREIAPKHSLKAHDGGVLAIELLRVSG

Protein Length: 80

Fln nts: CGATGGCGACATGGAAGCCTGTAAGGAAATACACTGGTGGTCATAAAGGGGCAGTTTCTTGCTTGATGACATTCCTGGCTTCCTCTGGGGAGACGCTTCTTGTTTCTGGTGCTAGTGATGGGTTACTTGTTCTCTGGAGTGCAGATCATGTGCAAGATTCTCGTGAAATTGCACCAAAACATAGTCTTAAGGCACATGATGGAGGTGTTTTGGCTATTGAGCTTTTAAGAGTTTCAGGT

Fln Alignment:

AllPine_a_c13316___MATWKPVRKYTGGHKGAVSCLMTFLASSGETLLVSGASDGLLVLWSADHVQDSREIAPKHSLKAHDGGVLAIELLRVSG
A5BGI9_______________MITWKLVRRYTGGHKGSISCLMTFMASSGEALLISGASDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVIG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
186	75	25			0.996478
188		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain