SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95596

Length: 450 nt

UniGene Fasta

>sp_v3.0_unigene95596
CAGCATTTTTTATCAACATTGCTGTTGAGAATTTTGCTGGATGGAAATTCGCTGCCACATTTGCTATCATAAAACATTCCTACTTTGCTGGCTTCTTGGTTTACATGTTGTTCAACTTAGCTCTGGTGTTTTCTTCGGTGTTCATTGTGACACATTTTGCACCTGCAGCAGCAGGCTCTGGCATCCCTGAAATTAAGGGCTACTTGAATGGTATTGATACACCTGGAATTCTTCTGTTCAGAACATTGATTGGGAAGATTTTTGGCAGCATTGGTTCAGTGGGAGGTGGTTTGGCACTTGGAAAGGAAGGGCCTCTTGTTCACACAGGAGCATGTATTGCTTCTCTTATTGGACAAGGTGGGTCTACAAAGTACCATATCAGCTCTAGATGGTTTCGAGATTTCAAGAATGACCGTGATCGTCGTGATCTTGTAACATGTGGATGTGCTG

Ace file of the UniGene sp_v3.0_unigene95596

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloride channel clc, putative n=1 Tax=Ricinus communis RepID=B9RTZ4_RICCO	-	-	0.0	77%
FL-Next	sp=Chloride channel protein CLC-d; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	84%
Sma3	Cl-channel clc-7	-	-	8.049e-24	-

Source	Gene names
Sma3	At3g27170; At5g26240; At5g26240/T19G15_90; At5g33280; At5g40890; At5g49890; C1C-Nt1; CHLREDRAFT_38456; CLC-A; CLC-B; CLC-C; CLC-D; F19N02.1; F9D12.10; GSVIVT00003626001; GSVIVT00006420001; GSVIVT00019950001; GSVIVT00035336001; GSVIVT00037838001; H0413E07.

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	trans-Golgi network	GO:0005802	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	voltage-gated chloride channel activity	GO:0005247	Molecular Function	-
Sma3	chloride ion binding	GO:0031404	Molecular Function	-
Sma3	chloride transport	GO:0006821	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	response to nitrate	GO:0010167	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Chloride channel, voltage gated	IPR001807	-	-
Sma3	Chloride channel ClC-plant	IPR002251	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Chloride channel, core	IPR014743	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G26240.1	CLC-D, ATCLC-D chloride channel D chr5:9189622-9194347 FORWARD LENGTH=792	84%
RefSeq	Arabidopsis thaliana	NP_197996.1	chloride channel protein CLC-d [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002315783.1	Cl-channel clc-7, partial [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92943

Fln msg: Distance to subject end: 553 aas, your sequence is shorter than subject: 149 - 792

Fln protein: AFFINIAVENFAGWKFAATFAIIKHSYFAGFLVYMLFNLALVFSSVFIVTHFAPAAAGSGIPEIKGYLNGIDTPGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLIGQGGSTKYHISSRWFRDFKNDRDRRDLVTCGCA

Protein Length: 150

Fln nts: CAGCATTTTTTATCAACATTGCTGTTGAGAATTTTGCTGGATGGAAATTCGCTGCCACATTTGCTATCATAAAACATTCCTACTTTGCTGGCTTCTTGGTTTACATGTTGTTCAACTTAGCTCTGGTGTTTTCTTCGGTGTTCATTGTGACACATTTTGCACCTGCAGCAGCAGGCTCTGGCATCCCTGAAATTAAGGGCTACTTGAATGGTATTGATACACCTGGAATTCTTCTGTTCAGAACATTGATTGGGAAGATTTTTGGCAGCATTGGTTCAGTGGGAGGTGGTTTGGCACTTGGAAAGGAAGGGCCTCTTGTTCACACAGGAGCATGTATTGCTTCTCTTATTGGACAAGGTGGGTCTACAAAGTACCATATCAGCTCTAGATGGTTTCGAGATTTCAAGAATGACCGTGATCGTCGTGATCTTGTAACATGTGGATGTGCTG

Fln Alignment:

AllPine_a_c13223___AFFINIAVENFAGWKFAATFAIIKHSYFAGFLVYMLFNLALVFSSVFIVTHFAPAAAGSGIPEIKGYLNGIDTPGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLIGQGGSTKYHISSXXXXXXXXXXXXXXLVTCGCA
P92943_______________AVFINLSVENFAGWKFALTFAIIQKSYFAGFIVYLLINLVLVFSSAYIITQFAPAAAGSGIPEIKGYLNGIDIPGTLLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWPQLFKSDRDRRDLVTCGCA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
75	25	75			0.996476
78			25	75	0.996476
79		75		25	0.996476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain