SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95493

Length: 219 nt

UniGene Fasta

>sp_v3.0_unigene95493
CAGATGATGGTTTCTCCTCGGGAGGGCAGTTGGGGCTTGGTAATGACTTTGATTATCTTGAACCTACAAGAGTTCAATTTGGTTGTAATTTTCAAGCCTTGCAAATTTCATGTGGCTTTAACCATACCGCAGCCATATTAGAGGAAAGATGATTAATGTATAGCACTTTTAAACAACAGTAATAATGTGTTGAATGCATTCTTTTGCTATATTGTCTCA

Ace file of the UniGene sp_v3.0_unigene95493

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FOG: RCC1 domain (ISS) [Ostreococcus tauri] emb\|CAL51564.1\| FOG: RCC1 domain (ISS) [Ostreococcus tauri]	-	-	2.0e-07	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	Gene names
Sma3	At5g08710; At5g08710/T2K12_60; GSVIVT00019258001; LOC_Os11g34320; Os11g0545800; OsI_36421; OsJ_34191; PHYPADRAFT_128224; POPTRDRAFT_863934;

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G08710.1	Regulator of chromosome condensation (RCC1) family protein chr5:2834858-2837866 REVERSE LENGTH=434	6.0e-14	65%
RefSeq	Arabidopsis thaliana	NP_680156.2	regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana]	8.0e-14	65%
RefSeq	Populus trichocarpa	XP_002307065.1	predicted protein [Populus trichocarpa]	4.0e-15	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACQ2

Fln msg: your sequence is shorter than subject: 50 - 243

Fln protein: DDGFSSGGQLGLGNDFDYLEPTRVQFGCNFQALQISCGFNHTAAILEER*

Protein Length: 51

Fln nts: CAGATGATGGTTTCTCCTCGGGAGGGCAGTTGGGGCTTGGTAATGACTTTGATTATCTTGAACCTACAAGAGTTCAATTTGGTTGTAATTTTCAAGCCTTGCAAATTTCATGTGGCTTTAACCATACCGCAGCCATATTAGAGGAAAGATGA___TTAATGTATAGCACTTTTAAACAACAGTAATAATGTGTTGAATGCATTCTTTTGCTATATTGTCTCA

Fln Alignment:

AllPine_a_c12956___DDGFSSGGQLGLGNDFDYLEPTRVQFGCNFQALQISCGFNHTAAILEER
D5ACQ2_______________DDGFSSGGQLGLGNDFDYLEPSRVQFDRNFQALQISCGFNHTAAIFEER

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
129		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain