UniGene Name: sp_v3.0_unigene95412
Length: 243 nt
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>sp_v3.0_unigene95412
A |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | plant U box protein 8 [Arabidopsis thaliana] | - | - | 4.0e-10 | 72% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 60% |
Sma3 | E3 ubiquitin ligase PUB14, putative | - | - | 8.705e-07 | - |
Source | Gene names |
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Sma3 | ACRE276; AT3G54850; At1g29340; At3g54850; At4g21350; B80; F15D2.34; F28P10.170; GSVIVT00011158001; GSVIVT00013139001; GSVIVT00016120001; GSVIVT00018150001; GSVIVT00024348001; GSVIVT00030470001; LOC_Os03g16824; OJ1119_D01.22; OSJNBa0075G19.19-1; OSJNBa0075 |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | ubiquitin ligase complex | GO:0000151 | Cellular Component | 0.0 | - |
Sma3 | proton-transporting two-sector ATPase complex, catalytic domain | GO:0033178 | Cellular Component | 0.0 | - |
Sma3 | ubiquitin-protein ligase activity | GO:0004842 | Molecular Function | 0.0 | - |
Sma3 | binding | GO:0005488 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
Sma3 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | GO:0016820 | Molecular Function | 0.0 | - |
Sma3 | apoptotic process | GO:0006915 | Biological Process | 0.0 | - |
Sma3 | defense response to fungus, incompatible interaction | GO:0009817 | Biological Process | 0.0 | - |
Sma3 | ATP synthesis coupled proton transport | GO:0015986 | Biological Process | 0.0 | - |
Sma3 | protein ubiquitination | GO:0016567 | Biological Process | 0.0 | - |
Sma3 | modification-dependent protein catabolic process | GO:0019941 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | IPR000194 | - | 0.0 | - |
Sma3 | Armadillo | IPR000225 | - | 0.0 | - |
Sma3 | Beta-lactamase, class-A/D | IPR000871 | - | 0.0 | - |
Sma3 | Zinc finger, RING-type | IPR001841 | - | 0.0 | - |
Sma3 | U box domain | IPR003613 | - | 0.0 | - |
Sma3 | TonB box, conserved site | IPR010916 | - | 0.0 | - |
Sma3 | Armadillo-like helical | IPR011989 | - | 0.0 | - |
Sma3 | EF-Hand 1, calcium-binding site | IPR018247 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT4G21350.1 | B80, PUB8 plant U-box 8 chr4:11356143-11357267 REVERSE LENGTH=374 | 3.0e-14 | 72% |
RefSeq | Arabidopsis thaliana | NP_193866.1 | U-box domain-containing protein 8 [Arabidopsis thaliana] | 4.0e-14 | 72% |
RefSeq | Populus trichocarpa | XP_002316696.1 | predicted protein [Populus trichocarpa] | 3.0e-16 | 72% |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: C0PSB5
Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 336 aas, your sequence is shorter than subject: 80 - 497
Fln protein:
C
Protein Length:
81
Fln nts:
A
Fln Alignment:
AllPine_a_c12704___RVMDSALPDDFRCPISLELMSDPVILCTGQTYDRSSIQRWFESGKR
C0PSB5_______________KISSPIFPEDFRCPISLELMQDPVIVATGQTYDRLCIQRWLDLGHK
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Position | A % | C % | G % | T % | Probability |
---|---|---|---|---|---|
53 | 25 | 75 | 0.996473 | ||
54 | 75 | 25 | 0.996473 | ||
55 | 75 | 25 | 0.996473 | ||
57 | 75 | 25 | 0.996473 |
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain