SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95347

Length: 1345 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene95347

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI	-	-	85%
FL-Next	sp=Probable phospholipid hydroperoxide glutathione peroxidase; crystallinum).	-	-	79%
Sma3	Glutathione peroxidase	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	glutathione peroxidase activity	GO:0004602	Molecular Function	0.0	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutathione peroxidase	IPR000889	-	0.0	-
Sma3		IPR012335	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11600.1	ATGPX6, PHGPX, LSC803, GPX6 glutathione peroxidase 6 chr4:7010021-7011330 REVERSE LENGTH=232	79%
RefSeq	Arabidopsis thaliana	NP_192897.2	glutathione peroxidase [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002299536.1	glutathione peroxidase [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LEF0

Fln msg:

Fln protein: MTGTSSEQYSSVHDLTVKDIRGNDVDLSIYKGKVLLIVNVASQCGLTTSNYTELNEVYAKYKDQGLEILAFPCNQFGGQEPGDNEQIVEVACTRFKAEFPIFDKVEVNGSSAAPVYKFLKSSKGGIFGKDIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKDVKKLLGMA*

Protein Length: 172

Fln nts: ATGGGGATGTGCAATCCCGATGCTCCCCAGCCAGACCTTTCCTTTAAGTCTTCCACGGGCATTTCCTGCGTTACCTATATCCAGAGCACCCTCATTTAAACCCCCTAAACCTTCCACGACCCCTCACGGTGTCCCTCCTTAAACTCAATCATTCTCACGCGCTTCTTTTTTATCAACTCCCATATTCCTATTCAAACCCTGAAACACCATTGTCTTGACCGCCTACCACTCATGCATTTCCCATGGGGCACCGGCCGTTTCTCGAGTCTTCCACGTACATTTCCTGCGTTACTCATGTTGAGAACACTCCTATATAAACCCCATGAACCCTCCTGTAACCCTCGTGCCCTTTACTTTCTAGCTTCTGCTCATACTAAATCATTCTCACGCCCTCTTTTTTGATCAAACCAAGAGTACTCAATAAAGATTTTGATCATTTTCGTGTTGGTTTTTCTGCTAATTTCGCAGCC_-_ATGACCGGGACCTCATCAGAACAGTATTCCTCGGTCCACGATCTCACAGTCAAGGATATCAGGGGTAATGATGTGGATCTCAGCATTTATAAGGGGAAGGTTTTACTCATTGTCAATGTTGCCTCTCAATGTGGGTTGACTACTTCTAACTATACTGAGCTGAATGAGGTGTATGCAAAGTACAAGGATCAAGGGTTAGAAATACTGGCTTTCCCATGCAATCAGTTTGGTGGACAGGAACCAGGTGACAATGAACAAATTGTAGAAGTAGCCTGCACTCGTTTTAAGGCAGAGTTTCCCATATTTGACAAGGTGGAAGTTAATGGTAGTAGTGCAGCTCCTGTGTACAAGTTCTTGAAGTCCAGCAAAGGTGGGATTTTTGGCAAAGACATAAAGTGGAACTTCACTAAGTTTTTGGTTGACAAAGATGGAAATGTTGTTGAACGATATGCTCCAACGACGTCTCCATTGAGTATTGAGAAAGATGTAAAGAAGTTGTTAGGAATGGCTTGA___TTCTTTCAAGAAACAACATATTATGCCTTTTCTGTTGGTAAATATCAAAGCAGCTGTCATTCAACAAGACTGTTATATTTGCTGCACAAGATTCAAGGGAGTATTGTAAGGGAGTTTGTCAGTTTATCAAAGCACTTATTTTATTTGAGTTGGTCAAGATTCAAAGGAGCATTGTTAGGGAGTTTGTCGGTTGATCAGCCTGTATGTTATGGCATACACTGTGTGTCATGTATTATTTTTAATATGTTTTGTCTACATTGTCATAATGCGGATATATCAATGTAATGTAATTATAACTCTTTGAACGTTTATGGAATGAAAAAAGGGCGCGGATAGGTTTGTTTGCACCAATAAATTTAAAT

Fln Alignment:

AllPine_a_c12538___MTGTSSEQYSSVHDLTVKDIRGNDVDLSIYKGKVLLIVNVASQCGLTTSNYTELNEVYAKYKDQGLEILAFPCNQFGGQEPGDNEQIVEVACTRFKAEFPIFDKVEVNGSSAAPVYKFLKSSKGGIFGKDIKWNFTKFLVDKDGNVVERYAPTTSPLSIEKDVKKLLG
Q9LEF0_______________MASQSTDQPKSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLIG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
539		33		66	0.997452
547		33		66	0.997452
791	16		83		0.994515
813	16		83		0.994512
817		83		16	0.994512
937			83	16	0.994512
953	16		83		0.994512
973	66		33		1.0
1040	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain