SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95261

Length: 1360 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene95261

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1683 family protein [Dictyostelium discoideum AX4] gb\|EAL63853.1\| DUF1683 family protein [Dictyostelium discoideum AX4]	-	-	3.0e-07	24%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	45%

Source	Gene names
Sma3	POPTRDRAFT_772085; VITISV_007638;

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1683, C-terminal	IPR012880	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002317629.1	predicted protein [Populus trichocarpa]	4.06377e-44	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9I0K4

Fln msg: your sequence is shorter than subject: 195 - 1142

Fln protein: MMPNEAYRQIFSVHPSVTSSALGVGTICIRWKRDMESMKLFSQGKARDVSHFQPKVTIDSPRVTTMQVKLSSVRVEKPPLIVSLECPSHALKIQNETTCLQEVRFSLVDSQSFLVSGAHSDTISILPYSSHILSYKLVPLASGLLQLPQVNLTATRYSASFHPPPASTQLFVFPSNPHFKSGPFTSGLAIVNSG*

Protein Length: 196

Fln nts: AATGATGCCAAATGAAGCATACAGACAGATCTTTTCAGTGCACCCATCTGTCACGTCTTCAGCACTTGGTGTAGGGACTATTTGCATTAGATGGAAAAGGGATATGGAATCTATGAAGTTATTCTCACAGGGAAAAGCAAGGGATGTTTCTCATTTTCAGCCTAAAGTAACTATTGATTCCCCAAGAGTGACAACAATGCAAGTAAAGCTTTCATCTGTAAGAGTGGAGAAACCTCCATTAATTGTGAGTCTGGAGTGCCCTTCTCATGCTTTGAAAATACAAAATGAGACCACGTGTCTGCAAGAAGTTAGATTTTCTTTAGTTGATTCACAGAGCTTCCTTGTGTCTGGAGCTCATAGTGACACGATTTCTATTTTACCTTATTCTAGCCATATACTGTCTTACAAGCTTGTTCCTTTAGCTTCTGGTCTGTTGCAGTTACCACAAGTCAATCTTACTGCTACTCGGTACTCGGCTAGTTTCCATCCTCCTCCAGCAAGTACACAGCTATTTGTTTTTCCATCCAATCCTCATTTCAAATCAGGTCCTTTTACATCTGGGTTGGCTATTGTTAATTCTGGATAA___ATCCATGAAAAATAAACACCATTCAGTATTTCAAGCATTTCTATATGAAAAGTCAATGATGCATCACACCCAAACAAGAGTCTCTAATAGTGGAAGCCCTAGTATAAATGTTGTCTTTCTTTTGGATTTTAGCAAAGAGTTTCCTGATTTTCCTTTCCGTCTTCTTACTCTCGTTGCTCCAAACAGAGAATCATAAAGTCGTGATATATTTGTGTTTCAGAAGCCAACTATGTTCATGGTTCACGACATCATATTAAGAGGCATTCACCAAAGTCCAGCTACTTGTCTACTAATACAATTTACGTCAGGTTACTTTAGCACAGGGATTTTTAGAATCTTACAGTGTTCCTACATGATATTTATACATTTGTATCTCTATTTATATCCTCTTATGTGTTTGTAAACAAATAATTTTTTTCATTTGGGTATGATTCCCAATATGTTGTAGTAATAACAAAGTGGGTTTGTTTCGGTGATTGTGCCAAGGCAAGCTTGACCAATCATTTCTCACTTCAATTCCCATTATGCTTCCATTTGGAGAACTGAGCCCTTTAACACCTCAACCTATGGTATAGGTGATTTTTTGTTGGGCTGAAAAAAATAAGAATAAAGGACACATGGACCATAAAGCTGGACATGAAATTCAGTGCCACTTAAAGGATATGAGCAATAACAGCCCGATGGAGAGATATATGCCCGTTGAGGCCAACGACTTCTTGAAATTGTTGTCGGCACTTCTGCCGTGTTGCACTGGATAACCTTGTATTGGTTATA

Fln Alignment:

AllPine_a_c12303___MMPNEAYRQIFSVHPSVTSSALGVGTICIRWKRDMESMKLFSQGKARDVSHFQPKVTIDSPRVTTMQVKLSSVRVEKPPLIVSLECPSHA---------LKIQNETTCLQEVRFSLVDSQSFLVSGAHSDTISILPYSSHILSYKLVPLASGLLQLPQVNLTATRYSASFHPPPASTQLFVFPSNPHF
B9I0K4_______________LVPGEEFKKVFTVIPEVESVSLDLGSVSLRWRRDSEKEDLSTSDAKKDW--------------VLTKHKLPDIKVESPPLVLSLECPPYAVLGDPIMYLIKIRNQTRLLQEVKFSLADAQSFVLSGSHSDTVFVLPKSEHTLSYKLVPLASGSQQLPRVTVTSARYSATFQPAIAASTVFVFPSKPHF

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
442			20	80	0.995493
443	20		80		0.995493
445	80	20			0.995493
446			80	20	0.995493
448			20	80	0.995493
449	80		20		0.995493
451		80		20	0.995493
452	80		20		0.995493
453		80		20	0.995493
454	80	20			0.995493
455	75		25		0.996473
456		20	80		0.995493
565	16			83	0.994512
566	16	66			0.988813
569			80	20	0.995493
576		20		80	0.995493
641	16			83	0.994512
642			83	16	0.994512
645	83		16		0.994512
832	85			14	0.993533
833		14		85	0.993533
835		14		85	0.993533
878		14		85	0.993533
880	12	87			0.992554
895	88	11			0.923564
896		44	55		1.0
898	88	11			0.923564
899	88		11		0.923564
904	88	11			0.923564
907			11	88	0.923564
908	88		11		0.923564
915		11	88		0.991528
917		11		88	0.991528
1000		42		57	1.0
1072		45		54	1.0
1112	10			90	0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain