SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95155

Length: 933 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene95155

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heparanase-like protein 3 [Arabidopsis thaliana] gb\|AED93922.1\| Heparanase-like protein 3 [Arabidopsis thaliana]	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Heparanase-like protein 3	-	-	1.702e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.2.-.-	-	1.702e-12	-

Source	Gene names
Sma3	AT5G61250; At5g07830; At5g34940; At5g61250; F13G24.30; GSVIVT00006396001; GSVIVT00016263001; GSVIVT00030073001; GSVIVT00032761001; GSVIVT00032762001; LOC_Os03g11320; LOC_Os12g38920; MAF19.29; MFB13.2; MGG23.2; OJ1579_C03.21; OSJNBa0032L17.36; OSJNBa0035I0

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	lysosomal membrane	GO:0005765	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Calmodulin-binding domain, plant	IPR012417	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G34940.2	AtGUS3, GUS3 glucuronidase 3 chr5:13235912-13238718 REVERSE LENGTH=536	49%
RefSeq	Arabidopsis thaliana	NP_851092.1	Heparanase-like protein 3 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002324603.1	predicted protein, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: your sequence is shorter than subject: 248 - 381

Fln protein: IISTTLGRGVGEHLVEKILDPSYLSREASTFKSLKAVLQEYGPWSSAWVGEAGGAYNSGHHLVTDAFIFSFWYLDQLGMASTYNTKSYCRQSLIGGNYGLLNTTTYVPNPDYYSALLWHRLMGKRVLSTISKGTEYLHAYAHCTKNARGVTLLLINLSRDTGISVQVSTGSGTSTDGNSKLEYHLTAKEGDLHSQTVRLNGNILEITPDGEIPSLPAVIVPAEKPILVAPLSIAFVQLPYVQFTACS*

Protein Length: 249

Fln nts: ATCATATCTACAACCTTGGGGCGAGGTGTGGGTGAGCACCTTGTGGAAAAGATACTGGATCCATCTTATCTGAGTCGAGAAGCATCCACATTCAAGAGTCTGAAAGCCGTTTTGCAGGAATATGGGCCTTGGTCAAGTGCATGGGTGGGTGAAGCTGGTGGAGCTTATAACAGTGGGCACCATCTCGTCACTGATGCTTTTATATTTAGTTTTTGGTATTTAGATCAGCTTGGCATGGCATCTACGTATAATACCAAGTCTTACTGCAGACAAAGCTTGATTGGTGGTAACTATGGCCTTTTAAACACTACGACTTATGTGCCAAATCCTGATTATTACAGTGCACTTCTCTGGCATCGATTAATGGGAAAACGTGTTCTTTCAACAATTTCTAAAGGAACAGAATATTTGCATGCTTATGCACATTGCACCAAGAATGCTAGGGGAGTCACTTTGCTCTTGATCAACTTGAGCAGGGACACCGGTATCTCTGTGCAGGTCTCTACGGGTTCTGGAACTTCCACAGACGGAAATTCTAAACTAGAATATCACTTAACAGCAAAAGAGGGTGATCTACATAGCCAGACTGTGCGCCTCAATGGGAACATTTTGGAGATAACTCCGGATGGTGAGATACCCTCTTTACCGGCGGTGATAGTACCTGCTGAGAAACCAATTCTTGTAGCCCCTCTCTCTATTGCATTCGTACAGCTTCCTTATGTTCAATTCACAGCGTGTAGCTGA___TAGGAATTGGCTGTAGATCAAAGCTACCATTTAATTGGTTATTTTAGCTGAAATTGGTTGGTTGCTATGGTTGCCAAAGAGATGTTTGATCGGCTCAATGGCACATGAATATATTGTCAGCAAATAAAAGTGTGCTGCCTTGGATACAGATTGGGATAATTCTTGCCCCTTTTTTCTAAGTTCCATCCC

Fln Alignment:

AllPine_a_c11994___LGRGVGEHLVEKILDPSYLSREASTFKSLKAVLQEYGPWSSAWVGEAGGAYNSGHHLVTDAFIFSFWYLDQLGMASTYNTKSYCRQSLIGGNYGLLNTTTYVPNPDYYSALLWHRLMGKRVLSTISKGTEYLHAYAHCTKNARGVTLLLINLSRDXXXXXXXXXXXXXXXXXNSKLEYHLTAKEGDLHSQTVRLNGNILEITPDGEIPSLPAVIVPAEKPILVAPLSIAFVQLPYVQFTACS
B8LM26_______________LGAGVDNDLVEKILNPSYLSQEASTFKGLQAVLQNYGPWSKAWVGETGGAYNSGHNLITNAFVMSFWYLDQLGMASAFSTKSFCRQSLIGGNYGLLNTTTFLPNPDYYSALLWHRLMGTRVLATNSTGTEYLRAYAHCTKSSRGVTLLLINLSRDTGISVQVSTGSGTSTDRNSRLEYHLTAKDGDLHSQTVLLNGNILNITPDGEIPSLSAVTVPANRPILVAPLSIAFVNLPYVQFPACS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
513	16		83		0.994512
515			16	83	0.994512
516		83	16		0.994512
517			16	83	0.994512
580	87			12	0.992554
628		72	27		1.0
629			72	27	1.0
635			72	27	1.0
637			27	72	1.0
638		27	72		1.0
639	72			27	1.0
641	72			27	1.0
642		27		72	1.0
647	30	70			1.0
695		11	88		0.991528
706	10	90			0.90298
707		10		90	0.90298
736	87		12		0.992554
752		87		12	0.992554
767			14	85	0.993538
779	33	66			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain