SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene95120

Length: 423 nt

UniGene Fasta

>sp_v3.0_unigene95120
AATGTCATCATGATCCCACCAGAGCTCTGGGTGACTTAACTGGTATCAAGAAACACTTTTGTCGAAAGCACGGAGAGAAGAAATGGAAATGTGAGAAATGCTCCAAAAATATGCTGTTCAGTCGGATTGGAAAGCGCATTCCAAGACTTGTGGTACGCGGGAGTATAGATGCGATTGTGGGACTCTTTTCTCCAGGAGGGACAGCTTCATCACACACCGAGCATTCTGCGATGCCTTGGCTGAGGAAAGTGCAAGGATTCCTACTGGACTAGTAGGAGGCCATTTATATAACAACAGTGTCTTAAGTTTGCAGGGACAAACAGCTGGCTCTCCAATGTCTATAATGACAGCCCCTTCATCCTCGGCCTTCAGGCCTTCACCGAGCTTTAACCATGGAGGAGGGGACTTAACTCTTCAATGTTT

Ace file of the UniGene sp_v3.0_unigene95120

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S7A8_RICCO	-	-	1.4013e-45	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Nucleic acid binding protein, putative	-	-	5.192e-30	-

Source	Gene names
Sma3	12.EGGPLANT.6; 12.PETUNIA.6; 12.POTATO.11; AT4g02670; At1g03840; At1g14580; At1g55110; At1g68130; At2g02070; At2g02080; At2g02080/F5O4.15; At3g13810; At3g45260; At3g50700; At4g02670; At5g03150; At5g44160; At5g60470; At5g66730; B1066G12.13; Ehd2; F15A17.18

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	regulation of cell division	GO:0051302	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G03840.1	MGP C2H2 and C2HC zinc fingers superfamily protein chr1:967596-970058 REVERSE LENGTH=506	3.99931e-42	90%
RefSeq	Arabidopsis thaliana	NP_171880.1	zinc finger protein MAGPIE [Arabidopsis thaliana]	4.99983e-42	90%
RefSeq	Populus trichocarpa	XP_002314745.1	predicted protein [Populus trichocarpa]	0.0	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRQ3

Fln msg: Overlapping hits, possible frame ERROR between 107 and 104, Distance to subject end: 337 aas, your sequence is shorter than subject: 140 - 612

Fln protein: CHHDPTRALGDLTGIKKHFCRKHGEKKWKCEKCxxxYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARIPTGLVGGHLYNNSVLSLQGQTAGSPMSIMTAPSSSAFRPSPSFNHGGGDLTLQC

Protein Length: 141

Fln nts: AATGTCATCATGATCCCACCAGAGCTCTGGGTGACTTAACTGGTATCAAGAAACACTTTTGTCGAAAGCACGGAGAGAAGAAATGGAAATGTGAGAAATGCxxxxxxxxxTATGCTGTTCAGTCGGATTGGAAAGCGCATTCCAAGACTTGTGGTACGCGGGAGTATAGATGCGATTGTGGGACTCTTTTCTCCAGGAGGGACAGCTTCATCACACACCGAGCATTCTGCGATGCCTTGGCTGAGGAAAGTGCAAGGATTCCTACTGGACTAGTAGGAGGCCATTTATATAACAACAGTGTCTTAAGTTTGCAGGGACAAACAGCTGGCTCTCCAATGTCTATAATGACAGCCCCTTCATCCTCGGCCTTCAGGCCTTCACCGAGCTTTAACCATGGAGGAGGGGACTTAACTCTTCAATGTTT

Fln Alignment:

AllPine_a_c11897___HHDPTRALGDLTGIKKHFCRKHGEKKWKCEKCSxKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARIPTGL
B8LRQ3_______________HHDPTRALGDLTGIKKHFCRKHGEKKWKCDRCSxRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEDSTRISEGL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
215	20	80			0.995493
220	83	16			0.994523

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain