SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94879

Length: 985 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene94879

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	auxin response factor 1 [Arabidopsis thaliana] ref\|NP_001031208.1\| auxin response factor 1 [Arabidopsis thaliana] sp\|Q8L7G0.2\|ARFA_ARATH RecName: Full=Auxin response factor 1 gb\|AAD39318.1\|AC007258_7 auxin response factor 1 [Arabidopsis thaliana] gb\|AAC49	-	-	2.0e-33	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	Auxin response factor 1	-	-	3.594e-14	-

Source	Gene names
Sma3	ARF1; ARF11; ARF12; ARF18; ARF19; ARF2; ARF23; ARF24; ARF4; ARF5; ARF7; ARF7A; ARF8; ARF9; At1g59750; At2g46530; At3g61830; At5g62000; CsARF1; F11C10.34; F13A10.6; F15G16.220; F23H11.7; GSVIVT00006185001; GSVIVT00006721001; GSVIVT00008630001; GSVIVT000180

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	negative regulation of cell proliferation	GO:0008285	Biological Process	-
Sma3	response to hormone stimulus	GO:0009725	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59750.1	ARF1 auxin response factor 1 chr1:21980414-21984193 FORWARD LENGTH=665	1.0e-35	56%
RefSeq	Arabidopsis thaliana	NP_176184.1	auxin response factor 1 [Arabidopsis thaliana]	2.0e-35	56%
RefSeq	Populus trichocarpa	XP_002318767.1	predicted protein [Populus trichocarpa]	9.0e-37	55%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW7

Fln msg: Overlapping hits, possible frame ERROR between 458 and 451, Unexpected STOP codon at 3' end. Distance to subject end: 567 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 163 - 920

Fln protein: MCLFVADVSESLLYEELWHACAGPFVTLPRIGEIAFHFPEGHIEQVDASTNQGVDKHMPLYNMPSKILCHVIDVQSQAEPETDEVFLQITLFP*ADKNEPSHDLGTTTPQPRKSNVHSxxxxTLTASDTSTHGGLKPRLGSELGVQEIKGRFEEDPPTIQHY*

Protein Length: 164

Fln nts: CTCCCCTACTAATCTACTCTAGTGAAGGCCTTTTGTCTGATCCACTTAGACACCCCTTGTATTTAAGAGTGCTGAAGGTAGTTAAGGTTTAATAC_-_ATGTGCTTGTTTGTTGCAGATGTCAGTGAATCTCTTCTTTATGAAGAGCTATGGCATGCATGTGCTGGTCCATTTGTTACTTTGCCTCGTATTGGGGAGATAGCTTTTCACTTTCCTGAAGGCCACATAGAGCAGGTTGATGCATCAACAAACCAAGGGGTTGATAAGCATATGCCACTGTATAATATGCCTTCTAAGATTCTTTGCCATGTGATCGATGTGCAATCTCAAGCGGAACCTGAGACAGATGAAGTATTTCTGCAAATCACTTTATTTCCATAGGCAGATAAAAATGAGCCCTCTCATGACTTAGGGACAACTACCCCTCAGCCTCGTAAGAGTAATGTTCATTCAxxxxxxxxxxxxACTCTTACTGCTTCTGATACAAGCACTCATGGAGGACTAAAACCAAGGTTGGGGTCAGAGCTGGGAGTGCAAGAAATTAAGGGCAGGTTTGAGGAAGATCCACCAACAATTCAACACTATTAAAGAGGCATTTGGAGACCATCCTGCAATCAAAACCAATGCCATCAACATCAAGTACCAGATCCTTTTCAGCTACAGGAAATTGCTGGAGCACCAGATTCTTGAGGCTTCTGTCGTAAGGAATTTTGGAGAACAAGATATAAAATGGATTTTTTCCCAAATAGTTAGGTTTGCTAAGTATCATCAACAAATGAGACTAGGTTGATACTTGTAAATTAAATTTTGCATTTTTACAGATTAATCAATGTGGCTACGGAGATCACCTTGAAATGTTTCATGGTTTGTTATAATGTGTGGCAAGAGTGTTTCCAATAGTTTCGTATCATTTATGGCCAAAGACTCTTGCCATTTCCATTCTGTATTCCCTTGTACTGTTCTCTAATATAATTCCTGTCTTTTACCTATC

Fln Alignment:

AllPine_a_c11173___ELWHACAGPFVTLPRIGEIAFHFPEGHIEQV------------------------------------DASTNQGVDKHMPLYNMPSKILCHVIDVQSQAEPETDEVFLQITLFP*ADKNEPSHDLGTTTPQPRKSNVHSxxxTLTASDTSTHGGLK-PRLGSE
B8LRW7_______________ELWHACAGPLISLPPKGSRVVYFPQGHLEQIADNELHKVGRGSFLNINQAVTPMAEEASSAASLNIPPSSISQAVNQQMLSYKLPPQILCRVLNVNLHADQEMDEVYAQLTLVPDSEKSEKC--IEEQLPVPPSSTPHMxxxTLTASDTSTHGGFSVPRRAAE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
824			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain