SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94773

Length: 432 nt

UniGene Fasta

>sp_v3.0_unigene94773
CAAGGGCACAAGAATACATCCGCTCTCTCCCCATCAAGCCGCGCGTGCCTTTCGCGACACTCTACCCGCACGCCAACCCGCTCGCTATTGATCTCCTGCAGCAGATGCTCTGCTTCGATCCGGCCAAGCGCATCAGCTGCGAGGCTGCGCTGAACCACCCTTATCTCCAAGTCTGGCATGACCCCGCTGACGAGCCGGTCTGCGAGAGCAAATTCGACTTTTCATTCGAGGAGGAAGATTCGATCGACGGAATGAAGAGGCTCATCATCGAGGAAGTTCAGTCTTTCCGCGCAGAGGTGCGCCAACAGGCGAGGGCCACGGGCCAGATGAAGAGACAAGACAGCTTGCCTATCCCCACCCGAGACGAGATTATAAGCTCGCCGGTGCAGGAGCATGGTCCCGTGCATGGCGCAACGTCTGGCTTCACTGCAC

Ace file of the UniGene sp_v3.0_unigene94773

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CMGC/MAPK/ERK protein kinase n=2 Tax=Agaricales RepID=A8N6A0_COPC7	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%

Source	Gene names
Sma3	At3g45640; F9K21.220; GSVIVT00024457001; LOC_Os06g06090; MAP; MAPK6; MICPUCDRAFT_27380; MICPUCDRAFT_38711; MPK1; MPK3; MPK6; OSJNBa0085L11.14; OSTLU_35051; Os06g0154500; OsI_21727; OsJ_20171; SIPK; T6D9.4; TIPK; mpk3; mpkc; ophe-13A;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	calmodulin-dependent protein kinase activity	GO:0004683	Molecular Function	-
Sma3	MAP kinase activity	GO:0004707	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	activation of MAPK activity involved in osmosensory signaling pathway	GO:0000169	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	camalexin biosynthetic process	GO:0010120	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Dihydroneopterin aldolase/epimerase domain	IPR006157	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	JNK MAP kinase	IPR008351	-	-
Sma3		IPR015742	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G45640.1	ATMPK3, MPK3, ATMAPK3 mitogen-activated protein kinase 3 chr3:16756918-16758476 FORWARD LENGTH=370	2.0e-20	59%
RefSeq	Arabidopsis thaliana	NP_190150.1	extracellular signal-regulated kinase 1/2 [Arabidopsis thaliana]	3.0e-20	59%
RefSeq	Populus trichocarpa	XP_002334994.1	predicted protein [Populus trichocarpa]	1.0e-19	56%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXQ5

Fln msg: STOP codon was not found. Distance to subject end: 41 aas, your sequence is shorter than subject: 143 - 372

Fln protein: RAQEYIRSLPIKPRVPFATLYPHANPLAIDLLQQMLCFDPAKRISCEAALNHPYLQVWHDPADEPVCESKFDFSFEEEDSIDGMKRLIIEEVQSFRAEVRQQARATGQMKRQDSLPIPTRDEIISSPVQEHGPVHGATSGFTA

Protein Length: 144

Fln nts: CAAGGGCACAAGAATACATCCGCTCTCTCCCCATCAAGCCGCGCGTGCCTTTCGCGACACTCTACCCGCACGCCAACCCGCTCGCTATTGATCTCCTGCAGCAGATGCTCTGCTTCGATCCGGCCAAGCGCATCAGCTGCGAGGCTGCGCTGAACCACCCTTATCTCCAAGTCTGGCATGACCCCGCTGACGAGCCGGTCTGCGAGAGCAAATTCGACTTTTCATTCGAGGAGGAAGATTCGATCGACGGAATGAAGAGGCTCATCATCGAGGAAGTTCAGTCTTTCCGCGCAGAGGTGCGCCAACAGGCGAGGGCCACGGGCCAGATGAAGAGACAAGACAGCTTGCCTATCCCCACCCGAGACGAGATTATAAGCTCGCCGGTGCAGGAGCATGGTCCCGTGCATGGCGCAACGTCTGGCTTCACTGCAC

Fln Alignment:

AllPine_a_c10904___AQEYIRSLPIKPRVPFATLYPHANPLAIDLLQQMLCFDPAKRISCEAALNHPYLQVWHDPADEPVC
A9NXQ5_______________ARRYIRQLPQFPKQPFSQKFPNMAPAAVDLLEKMLVFDPSKRITVQEALSHPYLASLHDINDEPSC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
266		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain