SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94702

Length: 505 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene94702
CTATGCTCCGAGCTTATAATACTTTATCTTTGAGTAAATCTGGCACTCTTCAGAAAAGCCAAGTATTAGCGTCACTGAAAAAAGCAGGCCTTCCAGCAATGATGCGGTTTTTGGATGCTGATACAGAAGGGTCTATTTCTTATGGCCATTTTCGCAACTTTATGCTGCTTCTTCCACCAGAACGGCTTGAAGATGATCCACGGAGCCTCTGGTTTGAGGCTGCAACTGTGGTAGCTGTAGCCCCACCTGTTGTAATTCCAGCGGGAAGTGTTCTCAAGTCAGCACTGGCTGGAGGCCTCTCCTGTGCATTTTCTACATCTTTGATGCATCCACTTGACACAATGAAGACACGTGTACAAGCATCAACACTCTCCTTTCCTGAACTTATTTCAAAGCTCCCACAAATTGGATATAGGGGTCTATACAGAGGCTCTGTTCCAGCAATTATAGGGCAATTTTCAAGCCATGGATTGCGCACTGGTTTTTTTGAGGCAACCAAAATGTT

Ace file of the UniGene sp_v3.0_unigene94702 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative mitochondrial carrier protein [Arabidopsis thaliana]	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Putative mitochondrial carrier protein	-	-	5.064e-06	-

Source	Gene names
Sma3	At2g26360/T9J22.3; At2g35800; GSVIVT00018239001; LOC_Os11g01270; LOC_Os12g01240; MICPUCDRAFT_51314; MICPUN_65976; Os11g0103700; Os12g0103000; OsI_37129; OsJ_32642; OsJ_34901; Ot11g02610; PHYPADRAFT_182927; PHYPADRAFT_20805; POPTRDRAFT_765330; POPTRDRAFT_8

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35800.1	mitochondrial substrate carrier family protein chr2:15044437-15048352 FORWARD LENGTH=823	75%
RefSeq	Arabidopsis thaliana	NP_850252.1	mitochondrial substrate carrier family protein [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002311112.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8H3

Fln msg: STOP codon was not found. Distance to subject end: 28 aas, your sequence is shorter than subject: 167 - 247

Fln protein: MLRAYNTLSLSKSGTLQKSQVLASLKKAGLPAMMRFLDADTEGSISYGHFRNFMLLLPPERLEDDPRSLWFEAATVVAVAPPVVIPAGSVLKSALAGGLSCAFSTSLMHPLDTMKTRVQASTLSFPELISKLPQIGYRGLYRGSVPAIIGQFSSHGLRTGFFEATKM

Protein Length: 168

Fln nts: CTATGCTCCGAGCTTATAATACTTTATCTTTGAGTAAATCTGGCACTCTTCAGAAAAGCCAAGTATTAGCGTCACTGAAAAAAGCAGGCCTTCCAGCAATGATGCGGTTTTTGGATGCTGATACAGAAGGGTCTATTTCTTATGGCCATTTTCGCAACTTTATGCTGCTTCTTCCACCAGAACGGCTTGAAGATGATCCACGGAGCCTCTGGTTTGAGGCTGCAACTGTGGTAGCTGTAGCCCCACCTGTTGTAATTCCAGCGGGAAGTGTTCTCAAGTCAGCACTGGCTGGAGGCCTCTCCTGTGCATTTTCTACATCTTTGATGCATCCACTTGACACAATGAAGACACGTGTACAAGCATCAACACTCTCCTTTCCTGAACTTATTTCAAAGCTCCCACAAATTGGATATAGGGGTCTATACAGAGGCTCTGTTCCAGCAATTATAGGGCAATTTTCAAGCCATGGATTGCGCACTGGTTTTTTTGAGGCAACCAAAATGTT

Fln Alignment:

AllPine_a_c10648___MLRAYNTLSLSKSGTLQKSQVLASLKKAGLPA-------MMRFLDADTEGSISYGHFRNFMXXXXXXXXXXXXRSLWFE
D5A8H3_______________MLSAFNSVRLCNCGTIHKSNLKALLQSASLPATERNVTAMLNFLNSDKEDSVSYSQFRNFMLFVPTDLIVNDPWTIWFE

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
43	33	66			0.997452
44	33			66	0.997452
48	75			25	0.996473
51	75			25	0.996473
113		75		25	0.996473
212	20		80		0.995493
221		83		16	0.994512
298	80	20			0.995493
299		20	80		0.995493
301			80	20	0.995493
387	66			33	0.997452
388			33	66	0.997452
398		66		33	0.997453
399		66	33		0.997452
401	66		33		0.997461
402	66		33		0.997461
403	66			33	0.997456
404	66			33	0.997461
405		66		33	0.997452
406		66		33	0.997452
407			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain