SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94655

Length: 527 nt

UniGene Fasta

>sp_v3.0_unigene94655
AATGTAAAGAGGAGAAATTTGCCACAGTTGCTTCTTGCAGGTGGGATTGTTTGGTTATTCTTCATGCTTCTGATCCTATTGAACATTGTCTGGTCCTGTGAATCTGCCGTCCATTCTGCTTCAGGTCGATGCAAGAAGAATAGCAGGGTATTCATCATGCTAGATACATTGGGGCTCTTGTCAAAACCTGTACATCGTTGTCCAATACCTGTTTTGGATGATCCAAATGACATCACAATTCCATCACAGAAGCAGGATGATAGCTTACTGCGAAATTTGTCCTATGTAATAGAGGACAAAGCAGTGAAAACTGACTCAAATCTAGTCCCGTTATTGGCGGATACCAAAATTGGAAGCAAAGAGAAGATAGTTTCAAACTGAAACCAGCTATGAAGGTACATTCCTTTAACACCCTATGGAAGGCGAGGAGAAGGGAGATGATGACCCAGAGCTAGCTTCGGAAGACAAATCTCTTCAGGGAAATAATTTCGGAGGCAGCAGCGGCGGCGGAGGAGGAGGAAATAATT

Ace file of the UniGene sp_v3.0_unigene94655

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF616 domain containing protein	-	-	8.0e-05	42%
FL-Next	tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	44%
Sma3	AT4g38500/F20M13_60	-	-	2.924e-06	-

Source	Gene names
Sma3	At4g38500;

Source	GOs	Term	Type	e value	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	0.0	-
Sma3	Protein of unknown function DUF616	IPR006852	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G38500.1	Protein of unknown function (DUF616) chr4:18008418-18010693 FORWARD LENGTH=499	4.0e-30	50%
RefSeq	Arabidopsis thaliana	NP_568044.1	uncharacterized protein [Arabidopsis thaliana]	5.0e-30	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7LIM8

Fln msg: Overlapping hits, possible frame ERROR between 333 and 318, Unexpected STOP codon at 3' end. Distance to subject end: 279 aas, your sequence is shorter than subject: 152 - 493

Fln protein: NVKRRNLPQLLLAGGIVWLFFMLLILLNIVWSCESAVHSASGRCKKNSRVFIMLDTLGLLSKPVHRCPIPVLDDPNDITIPSQKQDDSLLRNLSYVIEDKAVKTDxxxxxxxGGYQNWKQREDSFKLKPAMKVHSFNTLWKARRREMMTQS*

Protein Length: 153

Fln nts: AATGTAAAGAGGAGAAATTTGCCACAGTTGCTTCTTGCAGGTGGGATTGTTTGGTTATTCTTCATGCTTCTGATCCTATTGAACATTGTCTGGTCCTGTGAATCTGCCGTCCATTCTGCTTCAGGTCGATGCAAGAAGAATAGCAGGGTATTCATCATGCTAGATACATTGGGGCTCTTGTCAAAACCTGTACATCGTTGTCCAATACCTGTTTTGGATGATCCAAATGACATCACAATTCCATCACAGAAGCAGGATGATAGCTTACTGCGAAATTTGTCCTATGTAATAGAGGACAAAGCAGTGAAAACTGACxxxxxxxxxxxxxxxxxxxxxGGCGGATACCAAAATTGGAAGCAAAGAGAAGATAGTTTCAAACTGAAACCAGCTATGAAGGTACATTCCTTTAACACCCTATGGAAGGCGAGGAGAAGGGAGATGATGACCCAGAGCTAGCTTCGGAAGACAAATCTCTTCAGGGAAATAATTTCGGAGGCAGCAGCGGCGGCGGAGGAGGAGGAAATAATT

Fln Alignment:

AllPine_a_c10486___VKRRNLPQLLLAGGIVWLFFMLLILLNIVWSCESAVHSASGRCKKNSRVFIMLDTLGLLSKPVHRCPIPVLDDPNDITIPSQKQDDSLLRNLSYVIEDKAVKTDSxxxxxIGGYQNWKQREDSFKLKPAMKVH
G7LIM8_______________VWKKGFVRLVLVGGILWMLLILVALLFHIWSCQSSVSFLSVMCNKDSKVYSMLDTYGLVPK-LHRCPIPLFDDPDKIVIPTRRTSDKIVKNLSYFTEDEIPNDSSxxxxxFGGHLSWKQREESFKLKSNMKVH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
235	33	66			0.997476

SSRs (tot: 1)

Start position	End position	Sequence	Length
509	520	GGA GGA GGA GGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain