SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94643

Length: 1142 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene94643

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative chromodomain-helicase-DNA-binding protein [Arabidopsis thaliana]	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%

Source	Gene names
Sma3	At2g13370; CHR1544; CHR907; GSVIVT00022239001; OJ1477_F01.130-1; Os07g0660200; OsI_27196; OsJ_25446; P0496C02.115-1; PHYPADRAFT_132084; PHYPADRAFT_34; POPTRDRAFT_641048; POPTRDRAFT_804496; RCOM_0062740;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G13370.1	CHR5 chromatin remodeling 5 chr2:5544601-5555543 REVERSE LENGTH=1724	52%
RefSeq	Arabidopsis thaliana	NP_178970.3	chromatin remodeling 5 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002313369.1	chromatin remodeling complex subunit [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HA08

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 230 aas, your sequence is shorter than subject: 231 - 1763

Fln protein: WELLSAFKVANFGTTEDDGTFWSRLIHPEAISQAEEALAPRAARSTKSYAEVPQPDKNGKRRRRGGEVHERLQKRSGKVSEAPVQTLLPRIEGAVGYVCEWAGGGLSKKDANNFVKAVKKYGDTNRINVIAAEVGGSIESATTRAQIELFEALINGCKEVVRAVNGEGKGAVLDFFGVSVKAQELAERVRELQLLSKRIKRFNDSCFTISIENTPQKSLMVEVLQLESSG*

Protein Length: 232

Fln nts: ATGGGAACTATTAAGTGCTTTTAAGGTTGCGAATTTCGGCACTACGGAAGATGATGGGACATTTTGGAGTCGTTTAATTCATCCTGAAGCAATATCACAAGCCGAAGAAGCATTGGCCCCGCGTGCTGCAAGAAGCACCAAAAGTTATGCAGAGGTTCCCCAACCTGACAAGAATGGAAAGAGGAGGAGGAGAGGAGGTGAAGTGCATGAACGGTTGCAGAAGCGCTCTGGAAAAGTTTCAGAAGCACCTGTTCAAACATTGCTCCCTCGAATTGAAGGTGCTGTGGGTTATGTTTGTGAATGGGCAGGTGGTGGGCTATCAAAGAAGGATGCAAATAATTTTGTAAAAGCGGTAAAAAAATATGGTGACACAAACCGCATCAACGTGATAGCAGCTGAAGTTGGGGGATCAATTGAATCTGCTACAACTCGTGCCCAGATTGAACTTTTTGAAGCATTAATTAATGGATGCAAAGAGGTGGTTAGAGCAGTAAATGGCGAGGGCAAGGGGGCTGTCTTGGACTTCTTTGGAGTGTCTGTTAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCAAGCGATTTAATGACTCCTGTTTCACAATTTCGATTGAAAACACACCCCAGAAATCCCTCATGGTCGAAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAGGCTTCTTCTTGGCATTCACTACTATGGGTATGGAAATTGGGAAAGGATAAGAACAGACACTAAGCTTTGTCTAACTGGAAAGATAGCTCCGGCCGGCCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGAGCCTCTGCTCTCCTACGGAAGGAATTTGAATCTGAGAAGGACCAATCAATTGCAAGATTTCAATCAACTGATAAGGTAGGCTCTAGACGTGAAAGAGATGATATCAAAACTATAAATGTCGACTTGAAGGAAGGGCATGGACTGTCCTCTAAAACAGTCTCCAATAATCCTAAAAAGTGGACAAAGCCTAACAAGGAACGCCATCAGAAACGTCCTAAGGTTGAACCCAAAGTGAAGGAGGAAGGTGAAATATCTGAATCAGAAGAGCCTCAGTATCAAAGATACAAGGAAAAG

Fln Alignment:

AllPine_a_c10441___ELLSAFKVANFGTTEDDGTFWSRLIHPEAISQAEEALAPRAARSTKSYAEVPQPDKNGKRRRRGGEVHERLQKRSGKVSEAPVQTLLPRIEGAVGYVCEWAGGGLSKKDANNFVKAVKKYGDTNRINVIAAEVGGSIESATTRAQIELFEALINGCKEVVRAVNGEGKGAVLDFFGVSVKAQELAERVRELQLLSKRIKRFND
F6HA08_______________ELLSAFKVANFGSAEDDGSFWSRWIKPEAVAEAEDALAPRAARNTKSYAEANQPERISKRKKKAAEPQERAQKR--RKADYLVH-LVPRIEGAAAQVRGWSYGNLPKRDASRFSRAVLKFGNPSQIGSIVMEVGGTIEAAPTEAQIELFDALIDGCREAVKEGNLDPKGPMLDFFGVPVKANEVLNRVQELQLLAKRISRYED

SSRs (tot: 1)

Start position	End position	Sequence	Length
181	192	GAG GAG GAG GAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain