SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94600

Length: 3119 nt

UniGene Fasta

>sp_v3.0_unigene94600
ATGGGGATTTCTTTTGCGACTAAAATTGATAAAAAAAGAAAATCAAGAAGGGAATGGTATAGAAAGTCGGTCCTCTAGTCTATCTGCCCTCTCTATTTTGTGTTTGTGGAGGGAGGGACGGAGCGTGGAGGAATAACCAAGAGACGACACCGAATTCTAACCCCCCAAACAATTTATTGACGAAGGATCCATCATTGCCCATCCAGATCGTGTGAAGTTCACATATTTGCGAGCATTCTGCTGTAACTGATACTGAATCTCTTCCTTCTTGCAACCTCTGCAGCTTTAATCCCTTCGCACCTCTAAAGCCATTTAAATCTGTTCCCACAGCATAAAGGGGCAGGTTTTGATTTAAGCAAGGACTTCCAAGGAAACTTCGGGAAGGTTTGGAAGTAAGGTAGGAGAGGGCTTTGATCATATTGTAGTTGGGACCGGGTCGCGATGGGATATTTGATATAAGGGTGAATTGCATGGGGAAAGGATGCCAGAACTGCGTAGCGGAGTTCGCCAACCTCGTGTGAAATCAAAGCAACAAGTTCAGGTTCAAACACACAATTTGGAACCTACTGGACAGGCTTTAGTGGAACAGGTTCCGAGCAAAGCCACTAGGAGAGGTGCAGGAAGAGGAAGGGCTGCTAATCTTAATCCTAATACTAATGCCCCCCCTCTTCCAAAAGTTGGTGCTGTAAAGCCTACTGCTGCTGCTGTTCCTGGTGCAAGACAGAGGACTACTGGTGGTAGGGGCAGAGGAATTAGATCTGCGAAGAAGCTAGAGCCACCACACGTTGAGATTTTGCCACCTGCTGTCCAAGTTGGAGCTGAGCCCGAGGTCGAGGCCGAGGCTGATTTGGATTTGTTTATAAGAGAAGAAGTTGCTCCTCAGAACCCGAAAATGGATGAAAAGAGTGCTGACAAATTATTAGGGGATGACGAAGGAAGCATTACACCTATTCCACAGAAGGTTCAGGTGGGAACTTCTCCAGAGTACAAGGTTGAGCGGAAGTTGGGAAAAGGTGGGTTTGGGCAGGTATATGTTGGCCGAAGGCTAAGTGGCGGCAGCGAGCGCACGGGTCCAAATGCTATGGAGGTTGCATTGAAGTTTGAGCATCGCACCAGTAAAGGCTGTAATTACGGTCCTCCTTACGAGTGGCAAGTTTACAATACACTTAATGGTAGTTATGGATTGCCTTCGGTACATTACAAAGGGCATCAGAAAGATTACTATATTCTGGTAATGGATATGTTGGGGCCCAGCCTTTGGGATGTATGGAATACGTCCGGCCAAGCAATGTCTACAGAGATGGTTGCATGCATTGCTGTGGAGGCGATATCAATACTTGAGAAACTGCATTTAAAAGGATTTGTTCATGGAGATGTGAAGCCTGAAAATTTTTTACTTGGCCAGCCTGGAACTTCTGATGAGAAAAAACTCTTTCTGGTAGATCTTGGCTTGGCCTCAAAGTGGAAGGATACATCATCAGGTCATCATGTTGACTATGATCAACGGCCTGATGTCTTCAGAGGTACTGTTAGGTATGCCAGTGTACATGCACATTTGGGGAGAACAGGAAGTAGACGAGATGATCTAGAGTCTTTAGCATACACTCTAATATTCCTTCTTAGGGGCAGGTTGCCTTGGCAAGGTTACCAGGGTGACAACAAGGGCTTTCTTGTTTGTAAAAAGAAGATGGCAACTTCTCCCGAAATGTTGTGTTGCTTCTGTCCAGTTCCTTTCCGGCAATTTCTTGAAGCAGTCACAAATATGAAATTCGATGAAGAGCCAAATTATCTGAAGCTTATTTCCCTTTTTGAAGGCATTCTTGGACCTAATATTTCAACAAGGCCAATTAATACAGATGGAGCTCAGAAGGTTGGTTCAAAACGAGCAAGGCTACTAGTTGATATTGATGATGATGAGCAACCCAAGAAGAAGGTTCGACTTGGAACTCCAGCAACTCAATGGATATCAGTTTACAATGCTCGACGGCCTATGAAACAGAGATACCACTATAATGTTGCTGATGCACGGCTTCATCAACATGTTGAGAAAGGGAATGAAGATGGGTTGTATATTAGCTGTGTGGCTTCTTGCACAAACCTTTGGGCTATCATTATGGATGCAGGCACAGGGTTCACTTCTCAAGTATACGATCTTTCTGCTGTCTTCCTTCACAAGGATTGGATTATGGAACAGTGGGAAAAGAATTACTATATCAGTGCCATTGCTGGTGCTACGAATGGCAGTTCTTTGGTTGTTATGTCCAAGGGAACACCTTATACTCAGCAATCTTATAAAGTCAGCGATTCCTTTCCTTTCAAATGGATCAGTAAAAAGTGGAAGGAGGGATTTTATGTCACGTCAATGACAACTGCTGGGAGTCGATGGGGTGTGGTTATGTCTCGTAATGCAGGATTCTCAGATCAGGTTGTTGAACTTGATTTTCTCTATCCAAGTGAAGGCATTCATAGACGCTGGGAGAATGGTTATAGAATAACTGCAACTGCTGCAACCTGTGATCAAGCTGCTTTTATTCTGAGTGTGCCAAAGAGGAAACTAACAGATGAAACACAAGAAACACTTCGAACATCAGCTTTTCCTAGTACTCATGTTAAGGAGAAATGGTCCAAGAATCTTTATATTGCTGCAGTTTGTTATGGACGCACAGTATCCTGATCTTATTTGTTTCATCGGATGCTGTATCTCTTTTGGTAATTTGTGAAGCAATACACTGGGATGTCTATCAAAGGTGCAAAGGTGGACTCTTGAAGTTGAAATCGTGTTTGAGACCCCCCTTTGCTGGTATGTTTGTACATTTGTTGTTCGGATTTGCAGTGTTTTGAAATTTTCCCTAATATGGCAACAACATCTGAAACTTTAAATTGATATGTAGTTACTCTATACATTGGTTAACTGAATATGATATAAAGGGATTGCATTGATGTTTGCACCAAGCGTTTGAGGCATTGATGTATATGTGTTGTCATCAATTAAATATGATGTTCGTTGGTGATATGATTGTATATCTTTTTCTTTACAAATCCCAAATGTTATTTGCAGAATTATGTCAGATAACAACGAATAATGATGCATATTTGACTTATTCTTCTTGTAAATGACA

Ace file of the UniGene sp_v3.0_unigene94600

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] gb\|AAF05853.1\|AC011698_4 putative casein kinase [Arabidopsis thaliana] gb\|AEE74014.1\| protein kinase-like protein [Arabidopsis thaliana]	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Casein kinase, putative	-	-	1.165e-15	-

Source	Gene names
Sma3	At2g25750; At2g25760; At3g03930; At3g03940; At3g13670; At5g18190; B1046G12.17-1; B1046G12.17-2; CHLREDRAFT_153736; CHLREDRAFT_15736; F20H23.1; F20H23.2; GSVIVT00002083001; GSVIVT00004367001; GSVIVT00016758001; GSVIVT00024733001; GSVIVT00025476001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Translation elongation factor P/YeiP, conserved site	IPR013852	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G03940.1	Protein kinase family protein chr3:1014412-1018244 REVERSE LENGTH=701	77%
RefSeq	Arabidopsis thaliana	NP_187044.1	protein kinase-like protein [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002325416.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA41

Fln msg: your sequence is longer than subject: 731 - 444

Fln protein: MPELRSGVRQPRVKSKQQVQVQTHNLEPTGQALVEQVPSKATRRGAGRGRAANLNPNTNAPPLPKVGAVKPTAAAVPGARQRTTGGRGRGIRSAKKLEPPHVEILPPAVQVGAEPEVEAEADLDLFIREEVAPQNPKMDEKSADKLLGDDEGSITPIPQKVQVGTSPEYKVERKLGKGGFGQVYVGRRLSGGSERTGPNAMEVALKFEHRTSKGCNYGPPYEWQVYNTLNGSYGLPSVHYKGHQKDYYILVMDMLGPSLWDVWNTSGQAMSTEMVACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTSDEKKLFLVDLGLASKWKDTSSGHHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGDNKGFLVCKKKMATSPEMLCCFCPVPFRQFLEAVTNMKFDEEPNYLKLISLFEGILGPNISTRPINTDGAQKVGSKRARLLVDIDDDEQPKKKVRLGTPATQWISVYNARRPMKQRYHYNVADARLHQHVEKGNEDGLYISCVASCTNLWAIIMDAGTGFTSQVYDLSAVFLHKDWIMEQWEKNYYISAIAGATNGSSLVVMSKGTPYTQQSYKVSDSFPFKWISKKWKEGFYVTSMTTAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWENGYRITATAATCDQAAFILSVPKRKLTDETQETLRTSAFPSTHVKEKWSKNLYIAAVCYGRTVS*

Protein Length: 732

Fln nts: ATGGGGATTTCTTTTGCGACTAAAATTGATAAAAAAAGAAAATCAAGAAGGGAATGGTATAGAAAGTCGGTCCTCTAGTCTATCTGCCCTCTCTATTTTGTGTTTGTGGAGGGAGGGACGGAGCGTGGAGGAATAACCAAGAGACGACACCGAATTCTAACCCCCCAAACAATTTATTGACGAAGGATCCATCATTGCCCATCCAGATCGTGTGAAGTTCACATATTTGCGAGCATTCTGCTGTAACTGATACTGAATCTCTTCCTTCTTGCAACCTCTGCAGCTTTAATCCCTTCGCACCTCTAAAGCCATTTAAATCTGTTCCCACAGCATAAAGGGGCAGGTTTTGATTTAAGCAAGGACTTCCAAGGAAACTTCGGGAAGGTTTGGAAGTAAGGTAGGAGAGGGCTTTGATCATATTGTAGTTGGGACCGGGTCGCGATGGGATATTTGATATAAGGGTGAATTGCATGGGGAAAGG_-_ATGCCAGAACTGCGTAGCGGAGTTCGCCAACCTCGTGTGAAATCAAAGCAACAAGTTCAGGTTCAAACACACAATTTGGAACCTACTGGACAGGCTTTAGTGGAACAGGTTCCGAGCAAAGCCACTAGGAGAGGTGCAGGAAGAGGAAGGGCTGCTAATCTTAATCCTAATACTAATGCCCCCCCTCTTCCAAAAGTTGGTGCTGTAAAGCCTACTGCTGCTGCTGTTCCTGGTGCAAGACAGAGGACTACTGGTGGTAGGGGCAGAGGAATTAGATCTGCGAAGAAGCTAGAGCCACCACACGTTGAGATTTTGCCACCTGCTGTCCAAGTTGGAGCTGAGCCCGAGGTCGAGGCCGAGGCTGATTTGGATTTGTTTATAAGAGAAGAAGTTGCTCCTCAGAACCCGAAAATGGATGAAAAGAGTGCTGACAAATTATTAGGGGATGACGAAGGAAGCATTACACCTATTCCACAGAAGGTTCAGGTGGGAACTTCTCCAGAGTACAAGGTTGAGCGGAAGTTGGGAAAAGGTGGGTTTGGGCAGGTATATGTTGGCCGAAGGCTAAGTGGCGGCAGCGAGCGCACGGGTCCAAATGCTATGGAGGTTGCATTGAAGTTTGAGCATCGCACCAGTAAAGGCTGTAATTACGGTCCTCCTTACGAGTGGCAAGTTTACAATACACTTAATGGTAGTTATGGATTGCCTTCGGTACATTACAAAGGGCATCAGAAAGATTACTATATTCTGGTAATGGATATGTTGGGGCCCAGCCTTTGGGATGTATGGAATACGTCCGGCCAAGCAATGTCTACAGAGATGGTTGCATGCATTGCTGTGGAGGCGATATCAATACTTGAGAAACTGCATTTAAAAGGATTTGTTCATGGAGATGTGAAGCCTGAAAATTTTTTACTTGGCCAGCCTGGAACTTCTGATGAGAAAAAACTCTTTCTGGTAGATCTTGGCTTGGCCTCAAAGTGGAAGGATACATCATCAGGTCATCATGTTGACTATGATCAACGGCCTGATGTCTTCAGAGGTACTGTTAGGTATGCCAGTGTACATGCACATTTGGGGAGAACAGGAAGTAGACGAGATGATCTAGAGTCTTTAGCATACACTCTAATATTCCTTCTTAGGGGCAGGTTGCCTTGGCAAGGTTACCAGGGTGACAACAAGGGCTTTCTTGTTTGTAAAAAGAAGATGGCAACTTCTCCCGAAATGTTGTGTTGCTTCTGTCCAGTTCCTTTCCGGCAATTTCTTGAAGCAGTCACAAATATGAAATTCGATGAAGAGCCAAATTATCTGAAGCTTATTTCCCTTTTTGAAGGCATTCTTGGACCTAATATTTCAACAAGGCCAATTAATACAGATGGAGCTCAGAAGGTTGGTTCAAAACGAGCAAGGCTACTAGTTGATATTGATGATGATGAGCAACCCAAGAAGAAGGTTCGACTTGGAACTCCAGCAACTCAATGGATATCAGTTTACAATGCTCGACGGCCTATGAAACAGAGATACCACTATAATGTTGCTGATGCACGGCTTCATCAACATGTTGAGAAAGGGAATGAAGATGGGTTGTATATTAGCTGTGTGGCTTCTTGCACAAACCTTTGGGCTATCATTATGGATGCAGGCACAGGGTTCACTTCTCAAGTATACGATCTTTCTGCTGTCTTCCTTCACAAGGATTGGATTATGGAACAGTGGGAAAAGAATTACTATATCAGTGCCATTGCTGGTGCTACGAATGGCAGTTCTTTGGTTGTTATGTCCAAGGGAACACCTTATACTCAGCAATCTTATAAAGTCAGCGATTCCTTTCCTTTCAAATGGATCAGTAAAAAGTGGAAGGAGGGATTTTATGTCACGTCAATGACAACTGCTGGGAGTCGATGGGGTGTGGTTATGTCTCGTAATGCAGGATTCTCAGATCAGGTTGTTGAACTTGATTTTCTCTATCCAAGTGAAGGCATTCATAGACGCTGGGAGAATGGTTATAGAATAACTGCAACTGCTGCAACCTGTGATCAAGCTGCTTTTATTCTGAGTGTGCCAAAGAGGAAACTAACAGATGAAACACAAGAAACACTTCGAACATCAGCTTTTCCTAGTACTCATGTTAAGGAGAAATGGTCCAAGAATCTTTATATTGCTGCAGTTTGTTATGGACGCACAGTATCCTGA___TCTTATTTGTTTCATCGGATGCTGTATCTCTTTTGGTAATTTGTGAAGCAATACACTGGGATGTCTATCAAAGGTGCAAAGGTGGACTCTTGAAGTTGAAATCGTGTTTGAGACCCCCCTTTGCTGGTATGTTTGTACATTTGTTGTTCGGATTTGCAGTGTTTTGAAATTTTCCCTAATATGGCAACAACATCTGAAACTTTAAATTGATATGTAGTTACTCTATACATTGGTTAACTGAATATGATATAAAGGGATTGCATTGATGTTTGCACCAAGCGTTTGAGGCATTGATGTATATGTGTTGTCATCAATTAAATATGATGTTCGTTGGTGATATGATTGTATATCTTTTTCTTTACAAATCCCAAATGTTATTTGCAGAATTATGTCAGATAACAACGAATAATGATGCATATTTGACTTATTCTTCTTGTAAATGACA

Fln Alignment:

AllPine_a_c10275___LHLKGFVHGDVKPENFLLGQPGTSDEKKLFLVDLGLASKWKDTSSGH--HVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGDNKGFLVCKKKMATSPEMLCCFCPVPFRQFLEAVTNMKFDEEPNYLKLISLFEGILGPNISTRPINTDGAQKVGSKRARLLVDIDDDEQPKKKVRLGTPATQWISVYNARRPMKQRYHYNVADARLHQHVEKGNEDGLYISCVASCTNLWAIIMDAGTGFTSQVYDLSAVFLHKDWIMEQWEKNYYISAIAGATNGSSLVVMSKGTPYTQQSYKVSDSFPFKWISKKWKEGFYVTSMTTAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWENGYRITATAATCDQAAFILSVPKRKLTDETQETLRTSAFPSTHVKEKWSKNLYIAAVCYGRTVS
D5AA41_______________MHSKGYVHGDVKPENFLLGQPGTPDEKRLYLIDLGLATKWRDSSNTQPKHVDYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLIFLLRGRLPWQGYQGDNKGFLVCKKKMSTSPETLCCFCPQPFKQFLEFVINLKFDEEPNYSKLISLFDGIIGPNPAVRPIITDGAQKVGQKRGRLSMGEDDEEQPKKKIRLGIPASQWISVYNARRPMKQRYHYNVADSRLAQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYELSQSFLHKEWIMEQWEKSYYITAIAGANSGSSLVVMSKGTPYTQQSYKVSDFFPFKWINKKWKEGFYVTSMSTAASRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDGGFRITATAATWDQAAFILSVPKRKPGDETQETLRTSAFPSTHVKEKWAKNLYLAAVCYGRTVS

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
86	33	33	33		0.997743
87			33	66	0.997454
90		66	33		0.997454
91		66	33		0.997454
92			33	66	0.997454
485		16		83	0.994512
488		83	16		0.994512
489	83			16	0.994512
492	83	16			0.994512
500			83	16	0.994512
550	80		20		0.995493
762	85		14		0.993533
862		12		75	0.975346
1491		87		12	0.992554
1498	14			85	0.993533
1502		85		14	0.993533
1504		16		83	0.994512
1505	16		83		0.994512
1751		85		14	0.993533
1963	83		16		0.994512
2147	90	10			0.90298
2150			90	10	0.90298
2623		2		93	0.970804
2760			58	41	1.0
2761	58			41	1.0
2762	41			58	1.0
2766	41			58	1.0
2769		58		41	1.0
2770	58		41		1.0
2771	58	41			1.0
2773			58	41	1.0
2774	41		58		1.0
2776	41		58		1.0
2781	58			41	1.0
2785			87	12	0.992554
2786			87	12	0.992554
2788		87	12		0.992554
2790		87	12		0.992554
2791		12		87	0.992554
2792	12			87	0.992554
2793		12	87		0.992554
2797	12			87	0.992554
2975	90			10	0.90298
2992	10			90	0.90298
3093	33			66	0.997471
3097	66			33	0.997471

SSRs (tot: 2)

Start position	End position	Sequence	Length
696	707	CTG CTG CTG CTG	12
1906	1917	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain