SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94559

Length: 396 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene94559
TCCACAGCTGGGGAATTGTTCTAGACTTCGTTCTATTTCCCTGTTTTCAAATATTTTAGATGGAGGTATCCCACCAGAGATTGGCAAGCTTTCCATGCTTGAAACGCTAGATGTTTCAAGGAACTCCCTCACTCATGAGATTCCCAAGGAGTTGGGCAGTTGCCATGAGCTTTCCGTACTTGTGCTCTCAAATCAGCTGGACTACACTCCGGGCAGAAATTATACTGATTCTGATCCTACCAGCGGCCTATCAAATAGTGACAAAGGAGAGTTCAACTATTTTCAAGGAGTCATTCCTGCCAATCTTGTGACTCTTCCCCGGCTTAAGATTATTTGGGCTCCACTGAATACTCTGAATGGTCCCTTACCTGAGGATTGGGGTGAATGTAGCAGCCT

Ace file of the UniGene sp_v3.0_unigene94559 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%

Source	Gene names
Sma3	AT3G02130; At3g02130/F14P3_22; F14P3.22; F1C9.8; GSVIVT00030031001; GSVIVT00037964001; GSVIVT00038030001; LRR-RLK; OSJNBb0018H10.19; OSJNBb0039M16.9; Os07g0602700; OsI_26771; OsJ_25024; POPTRDRAFT_1076287; POPTRDRAFT_564304; POPTRDRAFT_668667; RCOM_102531

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	lignin metabolic process	GO:0009808	Biological Process	-
Sma3	pollen maturation	GO:0010152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G02130.1	RPK2, TOAD2, CLI1 receptor-like protein kinase 2 chr3:380726-384181 FORWARD LENGTH=1151	2.0e-30	46%
RefSeq	Arabidopsis thaliana	NP_186862.3	LRR receptor-like serine/threonine-protein kinase RPK2 [Arabidopsis thaliana]	3.0e-30	46%
RefSeq	Populus trichocarpa	XP_002311344.1	predicted protein [Populus trichocarpa]	6.0e-35	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 131 - 946

Fln protein: PQLGNCSRLRSISLFSNILDGGIPPEIGKLSMLETLDVSRNSLTHEIPKELGSCHELSVLVLSNQLDYTPGRNYTDSDPTSGLSNSDKGEFNYFQGVIPANLVTLPRLKIIWAPLNTLNGPLPEDWGECSS

Protein Length: 132

Fln nts: TCCACAGCTGGGGAATTGTTCTAGACTTCGTTCTATTTCCCTGTTTTCAAATATTTTAGATGGAGGTATCCCACCAGAGATTGGCAAGCTTTCCATGCTTGAAACGCTAGATGTTTCAAGGAACTCCCTCACTCATGAGATTCCCAAGGAGTTGGGCAGTTGCCATGAGCTTTCCGTACTTGTGCTCTCAAATCAGCTGGACTACACTCCGGGCAGAAATTATACTGATTCTGATCCTACCAGCGGCCTATCAAATAGTGACAAAGGAGAGTTCAACTATTTTCAAGGAGTCATTCCTGCCAATCTTGTGACTCTTCCCCGGCTTAAGATTATTTGGGCTCCACTGAATACTCTGAATGGTCCCTTACCTGAGGATTGGGGTGAATGTAGCAGCCT

Fln Alignment:

AllPine_a_c10095___PQLGNCSRLRSISLFSNILDGGIPPEIGKLSMLETLDVSRNSLTHEIPKELGSCHELSVLVLS-NQLDYTPGRNYTDSDPTSGLSNSDKGEFNYFQGVIPANLVTLPRLKIIWAPLNTLNGPLPEDWG
C0PTA1_______________PTLGNCISLSHLHLSENSLSGHIPPTLGNCTSLSHLDLSGNSLSGHIPPTLGKCISLSYIYLSGNSLSGHMPRTLGNLTQISHINLS----FNNLSGVIPVDLGSLQKLEWLGLSDNNLSGAIPVDLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain