SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94534

Length: 411 nt

UniGene Fasta

>sp_v3.0_unigene94534
AGCCTAAAAGATTACTGTTATTGAAGGTAGTTATTATTTATTTGTAGGGTTATGGATTGACAGAGTCTAGCGGGGCCGTAGCCATGACTATGACGGATGAAGAAAACGGACATTATGGAACGGCAGGCTTGCTTTCAGCTAATGTAGAAGCCAAAGTGGTGGACACAGCCAGTGGCAAAGCTATGCCTCCCAACCATAAAGGCGAGCTCTGGTTGCGAGGACCTACAATCATGAAAGGTTATTTGGGTAATGATGAAGCAACTACATCAACTTTAGACTCAGAGGGATGGCTGAAAACTGGGGATCTATGTTACATTGATGAGGAGGGTTTCCTTTTTGTTGTGGACAGAATAAAGGAGTTGATCAAGTACATTGCATTTCAGGTACAAAACATTTCAAGGATCATTTAAA

Ace file of the UniGene sp_v3.0_unigene94534

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9R8J7_RICCO	-	-	5.0e-40	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Acyl:coa ligase	-	-	8.185e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	2.264e-26	-
Sma3	Ligases, Forming carbon-sulfur bonds, Acid--thiol ligases.	EC:6.2.1.-	-	7.18866e-43	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Geraniol degradation	00281		7.18866e-43	%
Sma3	Tyrosine metabolism	00350		7.18866e-43	%
Sma3	Benzoate degradation	00362		7.18866e-43	%
Sma3	Fluorobenzoate degradation	00364		7.18866e-43	%
Sma3	alpha-Linolenic acid metabolism	00592		7.18866e-43	%
Sma3	Aminobenzoate degradation	00627		7.18866e-43	%
Sma3	Propanoate metabolism	00640		7.18866e-43	%
Sma3	Ethylbenzene degradation	00642		7.18866e-43	%
Sma3	Carbon fixation pathways in prokaryotes	00720		7.18866e-43	%
Sma3	Limonene and pinene degradation	00903		7.18866e-43	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		7.18866e-43	%
Sma3	Biosynthesis of plant hormones	01070		7.18866e-43	%
Sma3	Metabolic pathways	01100		7.18866e-43	%
Sma3	Biosynthesis of secondary metabolites	01110		7.18866e-43	%
Sma3	4-coumarate--CoA ligase.	EC:6.2.1.12	-	8.643e-14	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	8.643e-14	%
Sma3	Phenylalanine metabolism	00360	8.643e-14	%
Sma3	Phenylpropanoid biosynthesis	00940	8.643e-14	%
Sma3	Biosynthesis of phenylpropanoids	01061	8.643e-14	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	8.643e-14	%
Sma3	Metabolic pathways	01100	8.643e-14	%
Sma3	Biosynthesis of secondary metabolites	01110	8.643e-14	%

Source	Gene names
Sma3	4CL; 4CL1; 4CL2; 4CLL1; 4CLL2; 4CLL3; 4CLL4; 4CLL5; 4CLL6; 4CLL7; 4CLL8; 4CLL9; 4cl; 4cl2; ABG-1; ACLL13; ACLL15; ACLL16; ACLL18\|Ptr4CL13; ACLL20; ACLL21; At1g20480; At1g20490; At1g20500; At1g20510; At4g05160; At4g19010; At5g38120; At5g63380; B1065G12.10;

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20510.1	OPCL1 OPC-8:0 CoA ligase1 chr1:7103645-7105856 REVERSE LENGTH=546	66%
RefSeq	Arabidopsis thaliana	NP_973872.1	OPC-8:0 CoA ligase1 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002307770.1	acyl:coa ligase [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 87 aas, your sequence is shorter than subject: 136 - 548

Fln protein: PKRLLLLKVVIIYL*GYGLTESSGAVAMTMTDEENGHYGTAGLLSANVEAKVVDTASGKAMPPNHKGELWLRGPTIMKGYLGNDEATTSTLDSEGWLKTGDLCYIDEEGFLFVVDRIKELIKYIAFQVQNISRII*

Protein Length: 137

Fln nts: AGCCTAAAAGATTACTGTTATTGAAGGTAGTTATTATTTATTTGTAGGGTTATGGATTGACAGAGTCTAGCGGGGCCGTAGCCATGACTATGACGGATGAAGAAAACGGACATTATGGAACGGCAGGCTTGCTTTCAGCTAATGTAGAAGCCAAAGTGGTGGACACAGCCAGTGGCAAAGCTATGCCTCCCAACCATAAAGGCGAGCTCTGGTTGCGAGGACCTACAATCATGAAAGGTTATTTGGGTAATGATGAAGCAACTACATCAACTTTAGACTCAGAGGGATGGCTGAAAACTGGGGATCTATGTTACATTGATGAGGAGGGTTTCCTTTTTGTTGTGGACAGAATAAAGGAGTTGATCAAGTACATTGCATTTCAGGTACAAAACATTTCAAGGATCATTTAAA

Fln Alignment:

AllPine_a_c9995___GYGLTESSGAVAMTMTDEENGHYGTAGLLSANVEAKVVDTASGKAMPPNHKGELWLRGPTIMKGYLGNDEATTSTLDSEGWLKTGDLCYIDEEGFLFVVDRIKELIKYIAFQV
B8LP93_______________GYGLTETTGAIAYTNSDEENRRNGTVGLLSDVVEAKVVDPDSAKPLPPNQRGELWLRGPTVMKGYFGNEHATATTLDSEGWLRTGDLCYFDEEGFLFVVDRLKDLIKYKAYQV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
201	75		25		0.996473
332		25		75	0.996479
341		25		75	0.99649
342	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain