SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94515

Length: 474 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene94515
ATGACCAAAGTACACCAGTTATTCTCGAAAGTTCCCTATTACAACAAGGATAACAAACGCTACGAGCTTGACTTCAGAGACAGGGCAAGATTGGGTGTCCGGATCAGAACCTCTGTTAAAAATTTTCAGCTTACAATGGAGGAAAATGGCAAGCAATCAATACTGCTTCTTGGAAAGATTGGGAAATCAAAATATATTATGGATTACAGGTTCCCCATGACTGGCTACCAAGCTTTTTGTACATGCTTGGCATCTATTGATTCCAAGCTTTGCTGTTCTGTCTGAGGGATGATACAGAATCACTAGTGAGACAGGCTTACAGATTTGCTTTGATTCTTCCAAATGCTCATTGGAGAATAACATTCTTTAGTTTTCTTAGTATTATATCCGATCCTAAAGCTATGGAGGACAATAATGTGTCCCTATGCCATGGAGGAAGGCCTGGAAATTCGTTTGATTGATCACTTGTTTTAT

Ace file of the UniGene sp_v3.0_unigene94515 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tubby protein-like [Oryza sativa Japonica Group]	-	-	7.0e-31	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Chromosome chr9 scaffold_33, whole genome shotgun sequence	-	-	0.0	-

Source	Gene names
Sma3	GSVIVT00025236001;

Source	InterPros	Term	Type	e value	Identity
Sma3	Tubby, C-terminal	IPR000007	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16070.2	-	5.0e-35	59%
RefSeq	Arabidopsis thaliana	NP_173059.1	Tubby-like protein 8 [Arabidopsis thaliana]	4.0e-36	59%
RefSeq	Populus trichocarpa	XP_002299159.1	predicted protein [Populus trichocarpa]	3.00018e-42	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK95

Fln msg: your sequence is shorter than subject: 95 - 418

Fln protein: MTKVHQLFSKVPYYNKDNKRYELDFRDRARLGVRIRTSVKNFQLTMEENGKQSILLLGKIGKSKYIMDYRFPMTGYQAFCTCLASIDSKLCCSV*

Protein Length: 96

Fln nts: ATGACCAAAGTACACCAGTTATTCTCGAAAGTTCCCTATTACAACAAGGATAACAAACGCTACGAGCTTGACTTCAGAGACAGGGCAAGATTGGGTGTCCGGATCAGAACCTCTGTTAAAAATTTTCAGCTTACAATGGAGGAAAATGGCAAGCAATCAATACTGCTTCTTGGAAAGATTGGGAAATCAAAATATATTATGGATTACAGGTTCCCCATGACTGGCTACCAAGCTTTTTGTACATGCTTGGCATCTATTGATTCCAAGCTTTGCTGTTCTGTCTGA___GGGATGATACAGAATCACTAGTGAGACAGGCTTACAGATTTGCTTTGATTCTTCCAAATGCTCATTGGAGAATAACATTCTTTAGTTTTCTTAGTATTATATCCGATCCTAAAGCTATGGAGGACAATAATGTGTCCCTATGCCATGGAGGAAGGCCTGGAAATTCGTTTGATTGATCACTTGTTTTAT

Fln Alignment:

AllPine_a_c9938___LFSKVPYYNKDNKRYELDFRDRARLGVRIRTSVKNFQLTMEENGKQS---------ILLLGKIGKSKYIMDYRFPMTGYQAFCTCLASIDSKLCC
B8LK95_______________LKNKAPRWHEQLQCWCLNFRGRVTVA-----SVKNFQLVAATEPAQSVSQSDQDKVILQFGKVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLAC

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
293			20	80	0.995493
294	20			80	0.995493
302			20	80	0.995493
305		20	20	60	0.992557
307	20	60			0.99255
310	60	20		20	0.99255
311			80	20	0.995493
313	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain