SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94496

Length: 855 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene94496

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative leucine-rich repeat protein kinase n=1 Tax=Arabidopsis thaliana RepID=F4IV71_ARATH	-	-	9.94922e-44	36%
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	39%
Sma3	Nodulation receptor kinase	-	-	5.244e-09	-

Source	Gene names
Sma3	AT4g29990; AT5G59650; At3g46370; At4g29990; F18L15.90; F6G3.20; GSVIVT00034258001; GSVIVT00034259001; LOC_Os12g37980; LRR-RLK; MBP_91N22.18; NORK; OSJNBa0042H24.19; Os09g0352000; Os09g0353200; Os09g0359500; OsI_04161; OsI_19040; OsI_31006; OsI_31020; OsI_

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	nodulation	GO:0009877	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002338172.1	predicted protein, partial [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: I4DUG4

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 284 - 892

Fln protein: WDFSGVFPDRLLLNCSLKLNYSGNPYLRMGKRECNLDKKNKKENSDNHKKENV*LMVVLGILFIALMVDKFVKLRIKFYSTESKHFLNQDRFMNMVSKARAFTLDEMIAATQNFRREIGRGGFGSVFFGKLPEGKIIAVKVLSLFSRQGIQEFLNEVDLLSKINHRNLVSLLGYCNKTEQVMLIYEHMSGGSLRDHLYGNYAM*NMFVSVNKIAKVPTNILLLSSFPGPRAENSYLNWKRRLKIALDAAQGLEYLHVGCTPKIIHRDIKTANILLDSNLNGKLA

Protein Length: 285

Fln nts: ATGGGATTTCAGCGGAGTATTTCCTGATCGCCTGCTCCTTAATTGTTCGTTGAAACTCAATTACTCGGGAAATCCCTACCTACGGATGGGTAAGAGGGAATGTAATCTCGACAAGAAAAACAAGAAAGAAAACAGTGATAATCACAAGAAAGAAAACGTGTGATTGATGGTTGTCCTGGGAATTCTATTCATCGCGTTGATGGTAGATAAATTTGTAAAATTGAGAATAAAATTCTATTCTACTGAAAGCAAACATTTCTTGAACCAAGACCGCTTCATGAATATGGTGTCAAAAGCACGTGCCTTCACTCTAGATGAGATGATAGCTGCCACACAAAATTTTAGAAGGGAAATCGGACGAGGGGGATTTGGTTCGGTGTTCTTTGGCAAATTGCCCGAAGGAAAAATTATAGCTGTGAAAGTGCTATCCTTGTTCTCCCGACAAGGAATTCAAGAGTTTTTGAACGAGGTTGATCTTCTTTCTAAAATAAACCATAGGAACTTGGTATCTCTATTGGGCTACTGTAACAAAACCGAACAAGTTATGCTGATCTACGAACACATGTCAGGAGGATCCCTACGAGACCACCTTTATGGTAATTATGCAATGTAAAATATGTTTGTTTCAGTCAATAAAATAGCCAAGGTACCAACAAACATTTTGTTGTTGTCTTCTTTTCCAGGTCCTCGTGCAGAAAATTCATATCTAAATTGGAAAAGAAGGCTCAAAATAGCTTTAGATGCAGCACAGGGTTTGGAATACCTGCACGTGGGTTGCACCCCAAAAATAATTCACAGGGACATCAAGACGGCCAACATACTTTTGGATAGCAATTTGAATGGGAAGTTGGCCGA

Fln Alignment:

AllPine_a_c9864___KKNKKENSDNHKKENV*LMVVLGILFIALMVDKFVKL---RIKFYSTESKHF-------LNQDRFMNMVSKARAFTLDEMIAATQNFRREIGRGGFGSVFFGKLPEGKIIAVKVLSLFSRQGIQEFLNEVDLLSKINHRNLVSLLGYCNKTEQVMLIYEHMSGGSLRDHLYGNYAM*NMFVSVNKIAKVPTNILLLSSFPGPRAENSYLNWKRRLKIALDAAQGLEYLHVGCTPKIIHRDIKTANILLDSNLNGKLA
I4DUG4_______________QSNFPTGNKSHKIRNLILGCVVGATLIALVLVTFLWKYLHRPRAHITESQIMPPEETDGVEEGHAKEYHRLAIEYTEEEIKAATNNYSTVIGVGGFGSVFFGTL-SGYNVAVKILSSTSNQGQQEFQNEVTLLCRLYHKNLVSLIGYSKQTVEA-LVHEYMDCGTLKDHLHGK-----------------------------AKEEKPLDWNTRLNIALQAAEGLLYLHQGCNPPIIHRDIKCTNILLDARMNAKVA

SNPs (tot: 4)

Position	A %	G %	T %	Probability
702	33	66		0.997452
703	66		33	0.997452
704	66	33		0.997452
705	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain