SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94471

Length: 445 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene94471
ATGGGGATGTCATCTCCACTGTGTTTCAAAAGCTTTATTTAACAAAACCATTTCATGCCATCTTCAGTGGGTTTCAACATGGAATGGCTGTTTTGGGTTTTGGCAGCTCTGTCTGCTTGCTCATGGGTTCTTCTCAAAATTGCGACGCTCATATGGTGGAAACCTCTACAAATCAAGAGGTGCTTTGAATTGCAAGGAATCAGAGGACCTCCACACCGGCTACTCAGTGGAAATGCTGCTGATATTGCACGAATGGTCACCCAGGCAAAGTCCACAGCCATGCCATGGTCACATGACATACTCGCTCGAGTTCTTCCATATTTTCATCAGTGGACCAAAACATATGGTGAACAATTTATCTTTTGGTTTGGTCCGAAAGCCACGCTGACTGTTCCTCACCCTGAGCTTATCAAGGAGATATTGTCCAACAAGTTTGAGCACTATG

Ace file of the UniGene sp_v3.0_unigene94471 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SEM0_RICCO	-	-	4.0e-26	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	Gene names
Sma3	CYP734A; CYP734A10; POPTRDRAFT_100601;

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26710.1	BAS1, CYP734A1, CYP72B1 Cytochrome P450 superfamily protein chr2:11380700-11383413 FORWARD LENGTH=520	3.0e-29	46%
RefSeq	Arabidopsis thaliana	NP_180239.1	PHYB activation tagged suppressor 1 protein [Arabidopsis thaliana]	4.0e-29	46%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Distance to subject end: 394 aas, your sequence is shorter than subject: 130 - 517

Fln protein: MPSSVGFNMEWLFWVLAALSACSWVLLKIATLIWWKPLQIKRCFELQGIRGPPHRLLSGNAADIARMVTQAKSTAMPWSHDILARVLPYFHQWTKTYGEQFIFWFGPKATLTVPHPELIKEILSNKFEHY

Protein Length: 131

Fln nts: ATGGGGATGTCATCTCCACTGTGTTTCAAAAGCTTTATTTAACAAAACCATTTC_-_ATGCCATCTTCAGTGGGTTTCAACATGGAATGGCTGTTTTGGGTTTTGGCAGCTCTGTCTGCTTGCTCATGGGTTCTTCTCAAAATTGCGACGCTCATATGGTGGAAACCTCTACAAATCAAGAGGTGCTTTGAATTGCAAGGAATCAGAGGACCTCCACACCGGCTACTCAGTGGAAATGCTGCTGATATTGCACGAATGGTCACCCAGGCAAAGTCCACAGCCATGCCATGGTCACATGACATACTCGCTCGAGTTCTTCCATATTTTCATCAGTGGACCAAAACATATGGTGAACAATTTATCTTTTGGTTTGGTCCGAAAGCCACGCTGACTGTTCCTCACCCTGAGCTTATCAAGGAGATATTGTCCAACAAGTTTGAGCACTATG

Fln Alignment:

AllPine_a_c9762___MEWLFWVLAALSAC-SWVLLKIATLIWWKPLQIKRCFELQGIRGPPHRLLSGNAADIARMVTQAKSTAMPWSHDILARVLPYFHQWTKTYGEQFIFWFGPKATLTVPHPELIKEILSNKFEHY
A9NWW9_______________MEWLFWVLAAAFGCLGYFVLRIVTVIWWKPLQVKKCFESQGVRGPPYRLLNGNFADMVRMNTQAKSTPIPWSHDIVPRVLPYYHHWTKTYGKDFIYWVGSKPRLNVPHPELIKEILSNKFGHY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain