SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94448

Length: 406 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene94448
ATGGGGCTCTCACTCCATTTGTCGACCCTCGTCGCCTTCTGGCTTGATTGTTTCTATCCATGGCTTCGCGCCATAATCAAAACGGCAAGGCTATCGGCATCGATCTCGGAACCACATACAGCTGTATGGGTGTTTGGCTCGGTGATCGGGCTAGTGTGGATATCATTACCAATGAGCAGGGAAATAGGACTACTCCATCCATGGTTGCCTTCACAGACAGTGAACGCCTCATTGGTGAACCTGCAAAGAATCAAATCTTTTACAACGCTGCAAACACAGTTTTTGATGCCAAGAGGTTGATTGGGAGGCGTTTCTCCGATTCCTCTGTTCAAGCTGACAGGCGCCTTTGGCCATTTTCTGTCGTGTGCGGATCCAATGACAAGCCCTTAATCCAGGTAACATTTAA

Ace file of the UniGene sp_v3.0_unigene94448 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock cognate 70 kDa protein 2 n=13 Tax=Magnoliophyta RepID=HSP72_ARATH	-	-	2.0e-37	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Heat shock protein 70	-	-	2.273e-29	-

Source	Gene names
Sma3	At1g16030; At1g56410; At3g09440; At3g12580; At5g02490; At5g02500; At5g28540; At5g42020; BIP; BIP1; BIP2; BIP3; BIP4; BIP5; BIPE2; BIPE3; BLP4; BiP; BiPD; Bip; CHLREDRAFT_133650; CHLREDRAFT_133859; CHLREDRAFT_185673; F11F8; F13N6.9; F3L24.33; F7G19.5; GRP7

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, uncoupled	GO:0042624	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Chaperone DnaK	IPR012725	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G02490.1	Heat shock protein 70 (Hsp 70) family protein chr5:550296-552565 REVERSE LENGTH=653	1.4013e-45	71%
RefSeq	Arabidopsis thaliana	NP_195869.1	heat shock protein 70 [Arabidopsis thaliana]	1.4013e-45	71%
RefSeq	Populus trichocarpa	XP_002332588.1	predicted protein [Populus trichocarpa]	1.4013e-45	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXU2

Fln msg: Distance to subject end: 540 aas, your sequence is shorter than subject: 115 - 651

Fln protein: MASRHNQNGKAIGIDLGTTYSCMGVWLGDRASVDIITNEQGNRTTPSMVAFTDSERLIGEPAKNQIFYNAANTVFDAKRLIGRRFSDSSVQADRRLWPFSVVCGSNDKPLIQVTF

Protein Length: 116

Fln nts: ATGGGGCTCTCACTCCATTTGTCGACCCTCGTCGCCTTCTGGCTTGATTGTTTCTATCC_-_ATGGCTTCGCGCCATAATCAAAACGGCAAGGCTATCGGCATCGATCTCGGAACCACATACAGCTGTATGGGTGTTTGGCTCGGTGATCGGGCTAGTGTGGATATCATTACCAATGAGCAGGGAAATAGGACTACTCCATCCATGGTTGCCTTCACAGACAGTGAACGCCTCATTGGTGAACCTGCAAAGAATCAAATCTTTTACAACGCTGCAAACACAGTTTTTGATGCCAAGAGGTTGATTGGGAGGCGTTTCTCCGATTCCTCTGTTCAAGCTGACAGGCGCCTTTGGCCATTTTCTGTCGTGTGCGGATCCAATGACAAGCCCTTAATCCAGGTAACATTTAA

Fln Alignment:

AllPine_a_c9675___GKAIGIDLGTTYSCMGVWLGDRASVDIITNEQGNRTTPSMVAFTDSERLIGEPAKNQIFYNAANTVFDAKRLIGRRFSDSSVQADRRLWPFSVVCGSNDKPLIQVTF
A9NXU2_______________GKAIGIDLGTTYSCVGVWQHDR--VEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRITDASVQSDMKLWPFKVLSGPGDKPMIEVIY

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
8			25	75	0.996473
9	25			75	0.996473
18		25		75	0.996473
135		33		66	0.997452
144		25		75	0.996473
172	83			16	0.994512
175	66		33		1.0
188		83		16	0.994512
219		16		83	0.994512
222		16		83	0.994512
232	20	80			0.995493
240			20	80	0.995493
254		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain