SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94440

Length: 1286 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene94440

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] ref\|NP_851231.1\| RING/U-box domain-containing protein [Arabidopsis thaliana] dbj\|BAB08241.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED97347.1\| RING/U-box domain-containing protein [Ar	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Protein binding protein, putative	-	-	1.27e-09	-

Source	Gene names
Sma3	AT3G06330; At3g06330; At3g09760; At5g03180; At5g60580; B1153E06.19; F11F8_35; F15A17_210; F24P17.21; F8A24.19; GSVIVT00018834001; GSVIVT00019840001; GSVIVT00023186001; GSVIVT00024528001; MA4_106O17.32; OJ1661_C12.27; OSJNBa0023I17.10; OSJNBa0094O15.15; OS

Source	GOs	Term	Type	e value	Identity
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	3-hydroxyisobutyrate dehydrogenase-related, conserved site	IPR002204	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	YrdC-like domain	IPR006070	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	3-hydroxyisobutyrate dehydrogenase	IPR011548	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	3-hydroxyacid dehydrogenase/reductase	IPR015815	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	DHBP synthase RibB-like alpha/beta domain	IPR017945	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Arabidopsis thaliana	NP_851231.1	RING/U-box domain-containing protein [Arabidopsis thaliana]	0.0	45%
RefSeq	Populus trichocarpa	XP_002323191.1	predicted protein [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA07

Fln msg: your sequence is longer than subject: 321 - 241

Fln protein: MPVSPIVLLSPTSESTNGMPTAQQSSHLKLYRGNVLRQLTAPLNNISWSLKRKLSTGCVLDVRPTSHVMETGAVSGQKEFSVMDIDNEDGSQRIPEEEAVCRICLVVLGEGGKAFKMECNCKGELALAHEECLIKWFNIKGNRTCDVCKSEVQNLPVTLLRVPSAPANTRHPSTVHRHLEVHPYRVGQDILVLVIISMLAYFFFLQLLLVGSMGSEALAVALPSACVLGLLASMTASAMVSKSHIWTYSAFQFVFVIVFMLLFYLVLHMGAVLAVSLSYLTGLGAAMIGKSLLQYMRWRASVRNRSENSQDPTTVHQLQN*

Protein Length: 322

Fln nts: CAACACTCTATAATGGAAGCAATCATAGACTTCATGTTTCAAAATCATTTTATTTAGCAAGAGTAATTGTACCATTGCCGGTGAAAAGGACATCTTCA_-_ATGCCAGTTTCACCAATTGTGTTATTATCTCCAACTTCTGAGTCAACTAATGGCATGCCCACAGCCCAGCAATCTTCTCACCTTAAGCTATATAGAGGGAATGTTCTGCGTCAACTGACAGCGCCTCTAAATAATATATCATGGAGCTTGAAGAGAAAACTTTCCACAGGTTGCGTCTTGGATGTAAGGCCCACAAGCCATGTCATGGAAACAGGAGCTGTTTCTGGCCAAAAGGAATTCTCAGTAATGGATATTGATAATGAGGATGGCAGTCAGCGCATTCCCGAAGAAGAAGCAGTGTGCAGGATTTGCCTGGTTGTTCTTGGTGAAGGAGGCAAGGCTTTTAAAATGGAATGTAATTGCAAAGGTGAACTTGCACTTGCACATGAAGAATGTTTGATTAAATGGTTTAACATCAAGGGAAATAGAACATGTGATGTCTGTAAAAGTGAAGTTCAGAACCTACCTGTGACATTGTTGAGAGTACCAAGTGCTCCTGCCAACACTAGACATCCATCAACAGTACATCGGCACCTGGAGGTGCACCCTTATAGGGTTGGTCAAGATATACTAGTCCTTGTCATCATCAGCATGCTTGCATACTTCTTTTTTCTTCAACTTCTTCTGGTTGGTAGTATGGGTTCGGAAGCTCTTGCAGTAGCTTTGCCATCTGCATGTGTATTGGGCCTCCTTGCTTCAATGACTGCATCAGCTATGGTGAGCAAAAGCCATATCTGGACATATTCTGCATTCCAGTTTGTATTTGTAATTGTCTTCATGCTTCTTTTTTACTTAGTGCTCCATATGGGTGCTGTTTTAGCAGTTTCACTTTCCTATTTGACTGGACTTGGTGCTGCAATGATTGGGAAATCACTTCTGCAATACATGCGATGGAGAGCAAGTGTGAGAAACAGATCAGAGAATTCACAAGATCCTACCACTGTACATCAACTGCAAAATTAG___TTTACAGAATGTGTAGAATGATTGTCAATTGCCAATTTTAAACAATCGTACATAAACAAGTTAACAAGCAAGAAGGTGATTCAAAAGCTTTGCCTCTGCCCAGATACTCTTTTGTCACCCAAATGCGAGATGTTGTCTTAAGTAGCTTACTTGTAATAAAAGATAATAAATGTGCAGAAACTACATCTGCTTCAGAAGCTCCAGTCATAATAAAGTGTATATATT

Fln Alignment:

AllPine_a_c9641___EAVCRICLVVLG---EGGKAFKMECNCKGELALAHEECLIKWFNIKGNRTCDVCKSEVQNL
D5AA07_______________EKDCRICHLTLETNPEAGASIVLGCSCKDDLAAAHKQCAEAWFKIKGNRTCEICGSIARNV

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
309	33		66		1.0
653	66	33			0.999997
814		11		88	0.923564
896			20	80	0.995493
898		20		80	0.995493
899			20	80	0.995493
901			20	80	0.995494
907	80		20		0.995493
915	20			80	0.995493
948	80		20		0.995493
970	25			75	0.996473
971		25	75		0.996473
972	25		75		0.996473
974			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain