SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94404

Length: 454 nt

UniGene Fasta

>sp_v3.0_unigene94404
GCATGGAATGCTGGCAAAGGTTATACTTTTATAGGATCTGCTTTGAATTCATGTTGTCTGGCATATGTGACGGTGCTTGTGGAGAGAAAACTTGTTGGTAAGAAATACAGAGCAAAAGAGTATGAAGAATATCAGATGATGACCTCTGTGTGGATACCTTGGTTCAAGCTTAGACAAAACATTGGCAAGGATAAGAAGAAACATTGATTTCATCAAAACTGGGAGGTATCTACAGAGATCTCTCAAAGAGGACTTTGTCCATAAGTTTTTTATTTGAGACTCACTGTCTAAAGTCTTATATATCTTCCGTTGGTTGGGCATCAGTGTATTAGGGTCCATTTAATCTTCAGTTTTGTTGGCATTCAATTTCAAATGAGGCAGGAAAGACAGACAAAGTCTAGGACAGGGAATTCGATCTATATGAACAAGAGCTCAAAGAATAAGTTATCTGTAA

Ace file of the UniGene sp_v3.0_unigene94404

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oxidoreductase, acting on the CH-CH group of donors	-	-	6.0e-16	56%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	56%

Source	Gene names
Sma3	At2g46890; GSVIVT00026211001; PHYPADRAFT_162235; RCOM_1341620;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oxidoreductase activity, acting on the CH-CH group of donors	GO:0016627	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal	IPR001104	-	0.0	-
Sma3	Protein of unknown function DUF1295	IPR010721	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46890.1	Protein of unknown function (DUF1295) chr2:19266879-19268134 REVERSE LENGTH=322	1.0e-20	56%
RefSeq	Arabidopsis thaliana	NP_182212.1	uncharacterized protein [Arabidopsis thaliana]	2.0e-20	56%
RefSeq	Populus trichocarpa	XP_002320918.1	predicted protein [Populus trichocarpa]	6.0e-18	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7MWR7

Fln msg: your sequence is shorter than subject: 69 - 123

Fln protein: AWNAGKGYTFIGSALNSCCLAYVTVLVERKLVGKKYRAKEYEEYQMMTSVWIPWFKLRQNIGKDKKKH*

Protein Length: 70

Fln nts: GCATGGAATGCTGGCAAAGGTTATACTTTTATAGGATCTGCTTTGAATTCATGTTGTCTGGCATATGTGACGGTGCTTGTGGAGAGAAAACTTGTTGGTAAGAAATACAGAGCAAAAGAGTATGAAGAATATCAGATGATGACCTCTGTGTGGATACCTTGGTTCAAGCTTAGACAAAACATTGGCAAGGATAAGAAGAAACATTGA___TTTCATCAAAACTGGGAGGTATCTACAGAGATCTCTCAAAGAGGACTTTGTCCATAAGTTTTTTATTTGAGACTCACTGTCTAAAGTCTTATATATCTTCCGTTGGTTGGGCATCAGTGTATTAGGGTCCATTTAATCTTCAGTTTTGTTGGCATTCAATTTCAAATGAGGCAGGAAAGACAGACAAAGTCTAGGACAGGGAATTCGATCTATATGAACAAGAGCTCAAAGAATAAGTTATCTGTAA

Fln Alignment:

AllPine_a_c9501___AWNAGKGYTFIGSALNSCCLAYVTVLVERKLVGKKYRAKEYEEYQMMTSVWIPWFKLRQNIGKDK
D7MWR7_______________AWNLGQGWTLIGALVNTLCLVYVTILVERRMVKQQYRAEAYRAYQKTTSVWIPWFKSHVAATKDK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
217	20	20			0.992553
218	20	80			0.995494
242	80			20	0.995496
243		20		80	0.995495
248		80		20	0.995499
249	80			20	0.995505
250	80		20		0.995505
255	33		66		0.997452
256	66			33	0.997452
259		25		75	0.99649
263	33	66			0.997452
264		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain