SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94264

Length: 3143 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene94264
TATGGGGCTCTACGCCAGATTGTGGTACAGAGCGGATGAGGGTTTGGGAAAAGGAAATACCCTCGACGGAAGAGAATAATAGATCCGATCTTCCTTACGATTCCTTGGTAGAAAATTGCAGCTGGTAATGAGTGGGCTTTTTAAGTTTTAGGATCCGTGAGCGTAGACCTTTGGCATAGCCATGGCAAGAAACGGGAGCTGTTGCCCTCCTATGGATCTCCTCCGTTCGGAGGAGATGAATTTAGTTCAGCTTATCATTCCTGTTGAGTCTGCGCATGATAGCATTACGTACCTCGGACAGCTCGGCCTTCTTCAATTCAAGGATCTTAATGCAGACAAGAGCCCATTTCAACGGACATATGCTAATCAGGTGAAACGATGTGGAGAAATGTCACGGAAGTTGCGCTTTTTTAGAGAACAAATGATTAAAGCTGGGTTATCACCTTCTACAAGGTCTGCTTTACGTCCAGATATTGAGTTGGATGACCTTGAGATAAAGCTTGGTGAACTTGAAGCAGAACTTGTAGAGATTAATGCAAATAATGAAAAGTTGCAGCGTTCTCACAGCGAGCTTCAGGAATTTAAGCTTGTACTCCAAAAAGCTGGTTCATTCTTCTCATTAGCTCGAAGTGATGCGTCTGCTCATCAGAGAGAAATAGAAGAAACTTCGTATGTTGGGGAAGGATCTATGGATAGCCCGTTGTTATTAGAGCAGGAAATGTTGACAGAACCTTCAAAGCAAGCAAGGCTGGGGTTTATTAGTGGTCTTGTTCCCAAAGTAAAGGCAATACCTTTTGAAAGGATTCTTTTTCGTGCTACAAGGGGTAACATGTTCTTAAAGCAGTCTGCAGTTGAGCAACCTGTCACTGATCCTGTCTCAGGTGAAAAGGTTGAAAAAATTGTTTTTGTTATTTTTTATTCTGGAGAGCGAGCAAGGACTAAAGTAATGAAGATTTGTGAAGCCTTTGGGGCAAATCGCTATCCCTTCCCTGAAGAAATCAGTAAACAAAGGCAAATGATAGGAGAGGTTTCTGGAAGGCTCGCAGAGCTGCAAAGCACAATAGATGCTGGCATTCGCCATCGGGATAATGTGTTGACAACAATTGGATATCAGTTTGAACAGTGGAATCTTTTGGTAAGAACAGAGAAAGCTGTTTACAACACTCTGAACATGCTAAGCATTGATGTTACAAGGAAGTGTCTAGTTGCTGAGGGGTGGTGCCCTGTATTTGCAAAAAGTCAGGTTCAAGATGCATTGCATCGTGCAACTGTGGATAGTAACTCACAGGTTGGAACTATATTCCAAGTGCTTTATACAAAGGAGGCACCACCCACATATTTCAGAACAAATAAATTTACCACTGCTTTCCAAGAAATAGTTGATGCATATGGTGTGGCTAAGTACCAAGAGGCAAATCCTGGTGTATTCACCATCGTTACATTCCCATTTTTGTTCGCTGTAATGTTTGGTGACTGGGGCCATGGTATATGCTTATTACTTGCATCCTTGTGGCTCATATGCAGAGAAAGAAAACTTGGTAGTCAGAAACTTGGAGACATAATGGAGATGGCTTTTGGAGGTCGCTATGTGATTTTTATGATGGCAATCTTCTCAATTTACTGTGGACTCATCTACAATGAATTCTTTTCAGTTCCCTTTCACATTTTTGGCCCATCTGCCTATGCATGTCGTGATTCTTCCTGCAGGGATGCTTATTCAACAGGGTTGATAAAGGTTCGTGAGGCCTATCCATTTGGAGTTGATCCGGTGTGGCACGGTAGTCGAACTGAGTTGCCATTTTTAAACTCATTAAAGATGAAACTCTCTATTCTGTTGGGAGTTACACAAATGAATTTGGGAATTATTATGAGCTATTTCAATGCAAAATTCTTTCATAATCCACTGAATATTTGGTACCAATTCGTGCCCCAGGTGATTTTTTTGAACAGCCTGTTTGGCTATCTTTCGCTCCTCATAATCATTAAGTGGTGCACTGGTTCCCAAGCTGATCTTTATCATGTCATGATATATATGTTCTTAAGCCCAACTGATGAACTTGGTGAAAATCAACTTTTTTGGGGTCAGAGGAATGTTCAGATGGTGCTACTACTTCTGGCACTTGTTGCAGTGCCTTGGATGCTTCTTCCAAAGCCTCTGCTTCTGAAAAGGCAACATGACCAGAGGCTTCAAGGTCGCGGGTATGGCATTCTTGCAAGTTCAGACGCTGATTCTTTTGATATGGATCATGATCTTGACTCTGAACATGAGGAATTTGAATTTAGTGAGATTTTCGTACACCAGATGATACATACAATTGAATTTGTATTGGGTGCAGTCTCCAACACTGCATCTTATCTTAGGCTCTGGGCTCTTAGCTTGGCACATGCAGAGTTATCAACTGTGTTCTATGAAAAAGTCCTGCTGCTAGCTTGGGGATACAACAACATCTTCATTCTCATTATTGGGATTATTGTGTTTACATTTGCAACCATTGGTGTATTGCTCGTGATGGAAACTCTTAGCGCATTTCTTCATGCACTACGTCTTCACTGGGTTGAGTTTCAAAACAAGTTCTACGAGGGAGATGGTTATAAATTCCAACCTTTCTCTTTTGCATTACTGGTGGATGAAGATGATTAGTATCTGGTTTGTGGTCTTCAAGTCTTTGGGTTGGGAACTTGGTTCATGTAATCTATTATTAAACGATAGCAATCATTAATCTATTATAATTCAATTATTGCCACTGCATTTGCAAATTTGAAGTTTCAATTTTGAGAATCTAAAAAAATTAAAGGCATTGTTGGCTCTAAGAGGTTTGCTAGCTTTTAGCTTTCCCGATTACAATTATCAAACAAGGCCCTCTTTCAGCTGAGTTGTGAATAAATGGATGTGAATTGCATCAAAACTTGTAGCATTCTTTTTACATGTGAACCCAGACTCGTTGATAAATCAAGTCTGTTGATTTTTTAATGCATTTGAACAATGCTTATCACTGAAGTGTAGATTTAGACTCTCCTTGTGAGTTGGATTAAACTTAAGCTGCTCTGCTTTAATTCATATATTTGTTCCTCAAAGGATGAAGGCATTTTATTGTTCGTGAGACGGCAGGTGTTCTTTTAACTAAGGATGAAGTATCTTTCTT

Ace file of the UniGene sp_v3.0_unigene94264 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	V-type H+-transporting ATPase subunit I [Arabidopsis thaliana] gb\|AAL31187.1\| AT4g39080/F19H22_180 [Arabidopsis thaliana] gb\|AAO11531.1\| At4g39080/F19H22_180 [Arabidopsis thaliana] dbj\|BAE99335.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE87015.1\|	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	77%
Sma3	Chromosome chr3 scaffold_8, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00035934001;

Source	GOs	Term	Type	Identity
Sma3	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0/A0 complex, 116kDa subunit	IPR002490	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G39080.1	VHA-A3 vacuolar proton ATPase A3 chr4:18209513-18214752 FORWARD LENGTH=821	72%
RefSeq	Arabidopsis thaliana	NP_568051.1	V-type H+-transporting ATPase subunit I [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002313024.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7U5K0

Fln msg:

Fln protein: MARNGSCCPPMDLLRSEEMNLVQLIIPVESAHDSITYLGQLGLLQFKDLNADKSPFQRTYANQVKRCGEMSRKLRFFREQMIKAGLSPSTRSALRPDIELDDLEIKLGELEAELVEINANNEKLQRSHSELQEFKLVLQKAGSFFSLARSDASAHQREIEETSYVGEGSMDSPLLLEQEMLTEPSKQARLGFISGLVPKVKAIPFERILFRATRGNMFLKQSAVEQPVTDPVSGEKVEKIVFVIFYSGERARTKVMKICEAFGANRYPFPEEISKQRQMIGEVSGRLAELQSTIDAGIRHRDNVLTTIGYQFEQWNLLVRTEKAVYNTLNMLSIDVTRKCLVAEGWCPVFAKSQVQDALHRATVDSNSQVGTIFQVLYTKEAPPTYFRTNKFTTAFQEIVDAYGVAKYQEANPGVFTIVTFPFLFAVMFGDWGHGICLLLASLWLICRERKLGSQKLGDIMEMAFGGRYVIFMMAIFSIYCGLIYNEFFSVPFHIFGPSAYACRDSSCRDAYSTGLIKVREAYPFGVDPVWHGSRTELPFLNSLKMKLSILLGVTQMNLGIIMSYFNAKFFHNPLNIWYQFVPQVIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDELGENQLFWGQRNVQMVLLLLALVAVPWMLLPKPLLLKRQHDQRLQGRGYGILASSDADSFDMDHDLDSEHEEFEFSEIFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHAELSTVFYEKVLLLAWGYNNIFILIIGIIVFTFATIGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFQPFSFALLVDEDD*

Protein Length: 821

Fln nts: TATGGGGCTCTACGCCAGATTGTGGTACAGAGCGGATGAGGGTTTGGGAAAAGGAAATACCCTCGACGGAAGAGAATAATAGATCCGATCTTCCTTACGATTCCTTGGTAGAAAATTGCAGCTGGTAATGAGTGGGCTTTTTAAGTTTTAGGATCCGTGAGCGTAGACCTTTGGCATAGCC_-_ATGGCAAGAAACGGGAGCTGTTGCCCTCCTATGGATCTCCTCCGTTCGGAGGAGATGAATTTAGTTCAGCTTATCATTCCTGTTGAGTCTGCGCATGATAGCATTACGTACCTCGGACAGCTCGGCCTTCTTCAATTCAAGGATCTTAATGCAGACAAGAGCCCATTTCAACGGACATATGCTAATCAGGTGAAACGATGTGGAGAAATGTCACGGAAGTTGCGCTTTTTTAGAGAACAAATGATTAAAGCTGGGTTATCACCTTCTACAAGGTCTGCTTTACGTCCAGATATTGAGTTGGATGACCTTGAGATAAAGCTTGGTGAACTTGAAGCAGAACTTGTAGAGATTAATGCAAATAATGAAAAGTTGCAGCGTTCTCACAGCGAGCTTCAGGAATTTAAGCTTGTACTCCAAAAAGCTGGTTCATTCTTCTCATTAGCTCGAAGTGATGCGTCTGCTCATCAGAGAGAAATAGAAGAAACTTCGTATGTTGGGGAAGGATCTATGGATAGCCCGTTGTTATTAGAGCAGGAAATGTTGACAGAACCTTCAAAGCAAGCAAGGCTGGGGTTTATTAGTGGTCTTGTTCCCAAAGTAAAGGCAATACCTTTTGAAAGGATTCTTTTTCGTGCTACAAGGGGTAACATGTTCTTAAAGCAGTCTGCAGTTGAGCAACCTGTCACTGATCCTGTCTCAGGTGAAAAGGTTGAAAAAATTGTTTTTGTTATTTTTTATTCTGGAGAGCGAGCAAGGACTAAAGTAATGAAGATTTGTGAAGCCTTTGGGGCAAATCGCTATCCCTTCCCTGAAGAAATCAGTAAACAAAGGCAAATGATAGGAGAGGTTTCTGGAAGGCTCGCAGAGCTGCAAAGCACAATAGATGCTGGCATTCGCCATCGGGATAATGTGTTGACAACAATTGGATATCAGTTTGAACAGTGGAATCTTTTGGTAAGAACAGAGAAAGCTGTTTACAACACTCTGAACATGCTAAGCATTGATGTTACAAGGAAGTGTCTAGTTGCTGAGGGGTGGTGCCCTGTATTTGCAAAAAGTCAGGTTCAAGATGCATTGCATCGTGCAACTGTGGATAGTAACTCACAGGTTGGAACTATATTCCAAGTGCTTTATACAAAGGAGGCACCACCCACATATTTCAGAACAAATAAATTTACCACTGCTTTCCAAGAAATAGTTGATGCATATGGTGTGGCTAAGTACCAAGAGGCAAATCCTGGTGTATTCACCATCGTTACATTCCCATTTTTGTTCGCTGTAATGTTTGGTGACTGGGGCCATGGTATATGCTTATTACTTGCATCCTTGTGGCTCATATGCAGAGAAAGAAAACTTGGTAGTCAGAAACTTGGAGACATAATGGAGATGGCTTTTGGAGGTCGCTATGTGATTTTTATGATGGCAATCTTCTCAATTTACTGTGGACTCATCTACAATGAATTCTTTTCAGTTCCCTTTCACATTTTTGGCCCATCTGCCTATGCATGTCGTGATTCTTCCTGCAGGGATGCTTATTCAACAGGGTTGATAAAGGTTCGTGAGGCCTATCCATTTGGAGTTGATCCGGTGTGGCACGGTAGTCGAACTGAGTTGCCATTTTTAAACTCATTAAAGATGAAACTCTCTATTCTGTTGGGAGTTACACAAATGAATTTGGGAATTATTATGAGCTATTTCAATGCAAAATTCTTTCATAATCCACTGAATATTTGGTACCAATTCGTGCCCCAGGTGATTTTTTTGAACAGCCTGTTTGGCTATCTTTCGCTCCTCATAATCATTAAGTGGTGCACTGGTTCCCAAGCTGATCTTTATCATGTCATGATATATATGTTCTTAAGCCCAACTGATGAACTTGGTGAAAATCAACTTTTTTGGGGTCAGAGGAATGTTCAGATGGTGCTACTACTTCTGGCACTTGTTGCAGTGCCTTGGATGCTTCTTCCAAAGCCTCTGCTTCTGAAAAGGCAACATGACCAGAGGCTTCAAGGTCGCGGGTATGGCATTCTTGCAAGTTCAGACGCTGATTCTTTTGATATGGATCATGATCTTGACTCTGAACATGAGGAATTTGAATTTAGTGAGATTTTCGTACACCAGATGATACATACAATTGAATTTGTATTGGGTGCAGTCTCCAACACTGCATCTTATCTTAGGCTCTGGGCTCTTAGCTTGGCACATGCAGAGTTATCAACTGTGTTCTATGAAAAAGTCCTGCTGCTAGCTTGGGGATACAACAACATCTTCATTCTCATTATTGGGATTATTGTGTTTACATTTGCAACCATTGGTGTATTGCTCGTGATGGAAACTCTTAGCGCATTTCTTCATGCACTACGTCTTCACTGGGTTGAGTTTCAAAACAAGTTCTACGAGGGAGATGGTTATAAATTCCAACCTTTCTCTTTTGCATTACTGGTGGATGAAGATGATTAG___TATCTGGTTTGTGGTCTTCAAGTCTTTGGGTTGGGAACTTGGTTCATGTAATCTATTATTAAACGATAGCAATCATTAATCTATTATAATTCAATTATTGCCACTGCATTTGCAAATTTGAAGTTTCAATTTTGAGAATCTAAAAAAATTAAAGGCATTGTTGGCTCTAAGAGGTTTGCTAGCTTTTAGCTTTCCCGATTACAATTATCAAACAAGGCCCTCTTTCAGCTGAGTTGTGAATAAATGGATGTGAATTGCATCAAAACTTGTAGCATTCTTTTTACATGTGAACCCAGACTCGTTGATAAATCAAGTCTGTTGATTTTTTAATGCATTTGAACAATGCTTATCACTGAAGTGTAGATTTAGACTCTCCTTGTGAGTTGGATTAAACTTAAGCTGCTCTGCTTTAATTCATATATTTGTTCCTCAAAGGATGAAGGCATTTTATTGTTCGTGAGACGGCAGGTGTTCTTTTAACTAAGGATGAAGTATCTTTCTT

Fln Alignment:

AllPine_a_c8919___GSCCPPMDLLRSEEMNLVQLIIPVESAHDSITYLGQLGLLQFKDLNADKSPFQRTYANQVKRCGEMSRKLRFFREQMIKAGLSPSTRSALRPDIELDDLEIKLGELEAELVEINANNEKLQRSHSELQEFKLVLQKAGSFFSLARSDASAHQREIEETSYVGEGSMDSPLLLEQEMLTEPSKQARLGFISGLVPKVKAIPFERILFRATRGNMFLKQSAVEQPVTDPVSGEKVEKIVFVIFYSGERARTKVMKICEAFGANRYPFPEEISKQRQMIGEVSGRLAELQSTIDAGIRHRDNVLTTIGYQFEQWNLLVRTEKAVYNTLNMLSIDVTRKCLVAEGWCPVFAKSQVQDALHRATVDSNSQVGTIFQVLYTKEAPPTYFRTNKFTTAFQEIVDAYGVAKYQEANPGVFTIVTFPFLFAVMFGDWGHGICLLLASLWLICRERKLGSQKLGDIMEMAFGGRYVIFMMAIFSIYCGLIYNEFFSVPFHIFGPSAYACRDSSCRDAYSTGLIKVREAYPFGVDPVWHGSRTELPFLNSLKMKLSILLGVTQMNLGIIMSYFNAKFFHNPLNIWYQFVPQVIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDELGENQLFWGQRNVQXXXXXXXXXXXXXXXXXXXXXXKRQHDQRLQGRGYGILASSDADSFDMD-XXXXXXXXXXXXXEIFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHAELSTVFYEKVLLLAWGYNNXXXXXXXXIVFTFATIGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFQPFSFALLVDEDD
D7U5K0_______________GGCCPPMDLFRSEPMQLVQLIIPIESAHHTISYLGDLGLIQFKDLNVEKSPFQRTYAAQIKKCAEMARKLRFFKEQMSKAGLSPSAKIMMRGDIDMDDLEVKLGELEAELVEINANGEKLQRAYSELAEYKLVLHKAGEFFYSIRSSATAQQREIEAHS-ISEESVDTPLLLEQEMSTDLSKQVKLGFLAGLVPRVKSMAFERILFRATRGNVFLRQSAVEDPVTDPVSGEKIEKNVFVVFYSGEKVKNKILKICEAFGANRYSFPEDLGKQAQMITEVSGRLSELKTTIDVGLLHRGNLLQTIGDQFEQWNLLVRKEKSIYHTLNMLSIDVTKKCLVAEGWSPTFATKQIQDALQRATFDSNSQVGAIFQVLHTIESPPTYFRTNKFTSAFQEIVDAYGVAKYQEANPGVFTIVTFPFLFAVMFGDWGHGLCLLLATLFFIIREKKLSNQKLGDITEMTFGGRYVILMMALFSIYTGLIYNEFFSVPFELFGPSAYACRDLSCRDASTAGLIKVRRTYPFGVDPVWHGSRSELPFLNSLKMKMSILIGVAQMNLGIILSYFNAKFFQNSLNIWFQFVPQMIFLNSLFGYLSVLIIVKWCTGSQADLYHIMIYMFLSPTDDLGENQLFIGQKTGQIVLLLLALVAVPWMLLPKPFLMKKQHEERHQSQLYVPLQSTE-DSFQLDTSHDSHDHEEFEFGEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGFNNVIILIVGIIVFICATIGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFCPFSFALLSEEDD

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
74	80		20		0.995494
150	83		16		0.994519
526	90		10		0.90298
1029	90		10		0.90298
1079		10		90	0.90298
1080		10	90		0.90298
1083		90		10	0.90298
1087	77	11			0.968132
1089	88			11	0.991528
1094			12	87	0.992554
1427	88		11		0.991528
1634		12		87	0.992554
1635	12			87	0.992554
1801	88	11			0.991528
1803			90	10	0.90298
1804		90		10	0.90298
1837			85	14	0.993533
1839			85	14	0.993533
1908	87		12		0.992554
2439		12	87		0.999964
2440	12		87		0.999964
2535			90	10	0.90298
2536	90			10	0.90298
2620	10		90		0.90298
3002	80	10			0.959698
3003	90	10			0.90298
3004	90	10			0.90298
3005		10	90		0.90298
3006	10		90		0.90298
3066	80	20			0.995493
3068	20	80			0.995494
3069	60	20	20		0.992553
3071			80	20	0.995493
3075		25		75	0.996474
3110		66		33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain