SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94251

Length: 729 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene94251

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative polyol/monosaccharide transporter n=2 Tax=Vitis vinifera RepID=E3VWW0_VITVI	-	-	4.0e-20	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Sugar transporter, putative	-	-	5.318e-06	-

Source	Gene names
Sma3	At2g20780; F5H14.25; GSVIVT00010278001; GSVIVT00025836001; H0801D08.9; MICPUCDRAFT_45985; MaT2; OSJNBb0017I01.3; Os04g0678900; OsI_17936; OsJ_16636; PLT4; POPTRDRAFT_800401; POPTRDRAFT_807121; RCOM_0935410; RCOM_1175530; VITISV_017987;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20780.1	Major facilitator superfamily protein chr2:8947496-8949170 REVERSE LENGTH=526	1.0e-18	53%
RefSeq	Arabidopsis thaliana	NP_179671.2	putative polyol transporter 4 [Arabidopsis thaliana]	2.0e-18	53%
RefSeq	Populus trichocarpa	XP_002319907.1	predicted protein [Populus trichocarpa]	6.0e-22	55%

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
302		80		20	0.995493
305	80		20		0.995493
309			20	80	0.995493
310			80	20	0.995493
311		20	80		0.995493
313		20		80	0.995493
314			80	20	0.995493
315		20	80		0.995493
344		16		83	0.994512
346	83			16	0.994512
347	83	16			0.994512
348	16		83		0.994512
349	66			16	0.988813
350	83		16		0.994512
352	83	16			0.994512
357			16	83	0.994512
358	83	16			0.994512
361	83			16	0.994512
365	16			83	0.994512
367	66			33	1.0
528			22	77	0.999999
561	11			88	0.923589
563	11			88	0.923565
564			88	11	0.923565
592	87		12		0.992554
620			12	87	0.992554
634	83	16			0.994512
667			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain