SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94250

Length: 306 nt

UniGene Fasta

>sp_v3.0_unigene94250
ACCTTGTTGTCTTATCTGGTGCCTAGGCTATAGGGATATCCCACTGCAGCTCCTTTAGCAACCGGCTTTACAATTTTACAGGAAAGGGAGATATGGATCGGTACTTGAACAAGCATTATGCAGCTAAACTGAAGTTACAATGCAAGCCAGGGGACAAAAATACAAGGGTAGAGATGGATCCCGGCAGCTTTCGAACATTTGATACGCATTACTACACCAATCTAATGAAGCACAAAGGCCTCTTTCAATCCGATGCCGCACTTCTGACCAACAACGAGGTACAAGCGTTTGCAATATAGAATCGGC

Ace file of the UniGene sp_v3.0_unigene94250

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase 27, putative n=1 Tax=Ricinus communis RepID=B9SMM0_RICCO	-	-	2.0e-27	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Peroxidase 27, putative	-	-	9.213e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	1.15901e-41	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylalanine metabolism	00360	1.15901e-41	%
Sma3	Methane metabolism	00680	1.15901e-41	%
Sma3	Phenylpropanoid biosynthesis	00940	1.15901e-41	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.15901e-41	%
Sma3	Metabolic pathways	01100	1.15901e-41	%
Sma3	Biosynthesis of secondary metabolites	01110	1.15901e-41	%

Source	Gene names
Sma3	At1g05240; At1g05250; At1g05260; At2g39040; At3g01190; At3g21770; At4g11290; At5g15180; B1386G10.20; F8L21.80; F8M21_70; GSVIVT00006924001; GSVIVT00019842001; GSVIVT00019843001; GSVIVT00023610001; GSVIVT00026051001; GSVIVT00026052001; GSVIVT00026053001; G

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to desiccation	GO:0009269	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01190.1	Peroxidase superfamily protein chr3:67236-68477 REVERSE LENGTH=321	1.0e-34	58%
RefSeq	Arabidopsis thaliana	NP_186768.1	peroxidase 27 [Arabidopsis thaliana]	1.0e-34	58%
RefSeq	Populus trichocarpa	XP_002309830.1	predicted protein [Populus trichocarpa]	4.0e-34	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 37 aas, your sequence is shorter than subject: 99 - 324

Fln protein: LVVLSGA*AIGISHCSSFSNRLYNFTGKGDMDRYLNKHYAAKLKLQCKPGDKNTRVEMDPGSFRTFDTHYYTNLMKHKGLFQSDAALLTNNEVQAFAI*

Protein Length: 100

Fln nts: ACCTTGTTGTCTTATCTGGTGCCTAGGCTATAGGGATATCCCACTGCAGCTCCTTTAGCAACCGGCTTTACAATTTTACAGGAAAGGGAGATATGGATCGGTACTTGAACAAGCATTATGCAGCTAAACTGAAGTTACAATGCAAGCCAGGGGACAAAAATACAAGGGTAGAGATGGATCCCGGCAGCTTTCGAACATTTGATACGCATTACTACACCAATCTAATGAAGCACAAAGGCCTCTTTCAATCCGATGCCGCACTTCTGACCAACAACGAGGTACAAGCGTTTGCAATATAGAATCGGC

Fln Alignment:

AllPine_a_c8862___LVVLSGA*AIGISHCSSFSNRLYNFTGKGDMDRYLNKHYAAKLKLQCKPGDKNTRVEMDPGSFRTFDTHYYTNLMKHKGLFQSDAALLTNNEVQAF
A9P1P4_______________LVVLSGGHTIGMSHCNSFSSRLYNFTGKGDMDPSLDKSYAAHLKIKCKPGDNKTIVEMDPGSFRTFDTHYYVNVKKNRGLFQSDAALLTNNEAQSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain