SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene94066

Length: 873 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene94066 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R8R6_RICCO	-	-	3.0e-39	44%
FL-Next	sp=Probable S-acyltransferase At4g15080; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%

Source	Gene names
Sma3	At3g22180; At4g15080; FCAALL.183; GSVIVT00002912001; GSVIVT00037591001; MKA23.9; OJ1150_A11.12-1; OSJNBa0013K16.7; Os04g0585100; Os08g0556400; OsI_17137; OsI_30227; OsI_32407; OsJ_15928; OsJ_28249; OsJ_30349; P0635G10.35; PHYPADRAFT_132388; PHYPADRAFT_188

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-
Sma3	cell death	GO:0008219	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Peroxisome biogenesis factor 1, N-terminal	IPR015342	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G15080.1	DHHC-type zinc finger family protein chr4:8609085-8612229 REVERSE LENGTH=718	5.00264e-43	46%
RefSeq	Arabidopsis thaliana	NP_193244.2	DHHC-type zinc finger family protein [Arabidopsis thaliana]	7.00649e-43	46%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
637		20	80		0.995493
638	20			80	0.995493
639			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain