SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93975

Length: 1962 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene93975
GTTTGTTCTGGATGTGTACTCCGAAAACATCATCGAGACAGTTTTGAAAAACGTGCCTCTTGGCACGCCTCAACCCCTTTATAGCTTGTGCATAGTGATTTATGTGGTCCACTTCCTGTTGCTTCATTCTCTGGCTGCAAGTATTTCTTAACTTTCATTGATGATTTCTCCAGACGCACTTGGGTATACTTCTTAAAACTCAAGAGTGAAGTGTTTAACACATTTTTGGCCTTCAAGGCCTTTGTTGAAAAACAATCTGGACATCAAATTCTTAAGCTAAGAACTGATAATGGTGGAGAATATGTTAAAAACACATTCATCAACTTTTGCACCGAGAATGGAATTCAAATGCACATACTGTTCCATACACTCCACAACAAAATGGTGTAGCTGAAAGGAAGAATCGCACATTAAAGGAAATGGCTAATTGTATGCTACAATCCAAGGGACTTAGTCTTAGTTTTTGGGCTGAAGCAATTAATTGTGCAAATTATATAATAAATCGCACTCCCACTAAGGTTCTAAAGAATATCACTCCAGAAGAAGCATGGAGTTCAATCAAACCAGATGTAAGTCATTTCCGTGTTTTTGGAAGTGAAGCATGGGCCCATATTCCAGATGAAAAGCATAAAGCTTTAGAACCTAAGAGTGAGAAATGTACTTTTGTTGGATATTCTGAAGATGTAAAAGGTTATAGACTTATTCCATTTAAGTCCAAAAATGTTATCATTAGAAGAGATGTAAAATTTGATGAAAATAAATCGGCCTGCGAGCCTAGTCCAGCGGATGTGCCACCTCTTCCTATCTCTTCTACTTTTGAAAACATTTCTTCTTCAGATGATGAAAGTGAGGATGACAATCCTCCCCCACCTTCTCAGGATCCTCCTTCAGCTCCTCAACTTCCAAGATGGGTCCGTGCCACTCGAGATGCAGCAGGTGATCTTGCCGGTGATCCTTCAGATCAGCGCCGTACTCGTTCTCAGTTTGAATGAGCCTCTTCTTTACTGGCTCAAGCTCCAGTAAATCATGATCCTGACACTTTTGCATAAGCTTTAGGCCATCCAGATTGGGAAGCAGCTATGCATGAAGAATATCATTCATTGTTGGCAAATGATACATGGGATCTTGTTCCTCTACCAAAGGGACGAAAACTTGTAAGATGTAAATGGGTTTACAGAACCAAGTATGGGCCAGATGGCAAAGTTGATAAACATAAAGCTCGTCTTGTTGCTAAGGGCTTTTCACAGGTTGAAGGCATTGACTACACTGAAACCTTCTCCCCAGTTGCCAAAATGAACTCTATCCGCCTTGTTCTTTCCCTTGCTGCCTCTTTTAAATGGGAAGTCCATCAGATGGATGTTAAATCTGCCTTCTTGCATGGGGACTTGCATGAAGAAATCTATATGGAACAACCCATTGGCTTCATCCAAAAAGACTCCAGCCTTGTATGTCGACTTAAGAAATCTCTCTATGGTCTCAAGCAAGCTCCTCGGGCTTGGTATGCCAAAATGGATAGCTTTCTTTTAGAATCTGGCTTTTCTAGGTGTCATTCTGACAATACTGTCTACACCAAGAAAGTGGGTAACTCTCTTATCATCCTTGTTCTTTATGTTGATGATCTTATCCTTACTGGTAGTGATCCCAACCTTATAAACCATGTGAAGTCCATCCTTAAAAAGAAATTTCAAATGACAGACTTAGGACACTTACACTATTTTCTCGGTCTTCAAGTCTTGCAAACCAAGGAGGGTATTTCCATTTCCCAGTCCAAGTATGCTTGTGATATTCTTCGTCATTTTCACATGGAAGACTGTAAGCCAGCTCCTTCTCCCTTTCAGTCTGGAGTCAAACTTTCAGTCTCTTGTACTTCTCCTAAAGTTGATGCTACCTTATACCATCAACTTGTAGGAAAACTCTTGTACTTAACCCATACTCGTCCTGACCTTTCCTTTGTTGTTGGTC

Ace file of the UniGene sp_v3.0_unigene93975 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	2.023e-09	-

Source	Gene names
Sma3	F11I4_21; H0512B01.8; LOC_Os03g46450; LOC_Os03g61660; LOC_Os10g01750; LOC_Os11g05840; LOC_Os11g29610; LOC_Os12g05520; LOC_Os12g23320; LOC_Os12g39190; OSIGBa0134J07.9; OSJNBa0012L23.31; OSJNBa0017O06.12; OSJNBa0053E05.7; OSJNBa0056E06.5; OSJNBa0065H03.10;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	alpha-mannosidase activity	GO:0004559	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	mannose metabolic process	GO:0006013	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR010256	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 294 - 363

Fln protein: MHEEYHSLLANDTWDLVPLPKGRKLVRCKWVYRTKYGPDGKVDKHKARLVAKGFSQVEGIDYTETFSPVAKMNSIRLVLSLAASFKWEVHQMDVKSAFLHGDLHEEIYMEQPIGFIQKDSSLVCRLKKSLYGLKQAPRAWYAKMDSFLLESGFSRCHSDNTVYTKKVGNSLIILVLYVDDLILTGSDPNLINHVKSILKKKFQMTDLGHLHYFLGLQVLQTKEGISISQSKYACDILRHFHMEDCKPAPSPFQSGVKLSVSCTSPKVDATLYHQLVGKLLYLTHTRPDLSFVVG

Protein Length: 295

Fln nts: GTTTGTTCTGGATGTGTACTCCGAAAACATCATCGAGACAGTTTTGAAAAACGTGCCTCTTGGCACGCCTCAACCCCTTTATAGCTTGTGCATAGTGATTTATGTGGTCCACTTCCTGTTGCTTCATTCTCTGGCTGCAAGTATTTCTTAACTTTCATTGATGATTTCTCCAGACGCACTTGGGTATACTTCTTAAAACTCAAGAGTGAAGTGTTTAACACATTTTTGGCCTTCAAGGCCTTTGTTGAAAAACAATCTGGACATCAAATTCTTAAGCTAAGAACTGATAATGGTGGAGAATATGTTAAAAACACATTCATCAACTTTTGCACCGAGAATGGAATTCAAATGCACATACTGTTCCATACACTCCACAACAAAATGGTGTAGCTGAAAGGAAGAATCGCACATTAAAGGAAATGGCTAATTGTATGCTACAATCCAAGGGACTTAGTCTTAGTTTTTGGGCTGAAGCAATTAATTGTGCAAATTATATAATAAATCGCACTCCCACTAAGGTTCTAAAGAATATCACTCCAGAAGAAGCATGGAGTTCAATCAAACCAGATGTAAGTCATTTCCGTGTTTTTGGAAGTGAAGCATGGGCCCATATTCCAGATGAAAAGCATAAAGCTTTAGAACCTAAGAGTGAGAAATGTACTTTTGTTGGATATTCTGAAGATGTAAAAGGTTATAGACTTATTCCATTTAAGTCCAAAAATGTTATCATTAGAAGAGATGTAAAATTTGATGAAAATAAATCGGCCTGCGAGCCTAGTCCAGCGGATGTGCCACCTCTTCCTATCTCTTCTACTTTTGAAAACATTTCTTCTTCAGATGATGAAAGTGAGGATGACAATCCTCCCCCACCTTCTCAGGATCCTCCTTCAGCTCCTCAACTTCCAAGATGGGTCCGTGCCACTCGAGATGCAGCAGGTGATCTTGCCGGTGATCCTTCAGATCAGCGCCGTACTCGTTCTCAGTTTGAATGAGCCTCTTCTTTACTGGCTCAAGCTCCAGTAAATCATGATCCTGACACTTTTGCATAAGCTTTAGGCCATCCAGATTGGGAAGCAGCT_-_ATGCATGAAGAATATCATTCATTGTTGGCAAATGATACATGGGATCTTGTTCCTCTACCAAAGGGACGAAAACTTGTAAGATGTAAATGGGTTTACAGAACCAAGTATGGGCCAGATGGCAAAGTTGATAAACATAAAGCTCGTCTTGTTGCTAAGGGCTTTTCACAGGTTGAAGGCATTGACTACACTGAAACCTTCTCCCCAGTTGCCAAAATGAACTCTATCCGCCTTGTTCTTTCCCTTGCTGCCTCTTTTAAATGGGAAGTCCATCAGATGGATGTTAAATCTGCCTTCTTGCATGGGGACTTGCATGAAGAAATCTATATGGAACAACCCATTGGCTTCATCCAAAAAGACTCCAGCCTTGTATGTCGACTTAAGAAATCTCTCTATGGTCTCAAGCAAGCTCCTCGGGCTTGGTATGCCAAAATGGATAGCTTTCTTTTAGAATCTGGCTTTTCTAGGTGTCATTCTGACAATACTGTCTACACCAAGAAAGTGGGTAACTCTCTTATCATCCTTGTTCTTTATGTTGATGATCTTATCCTTACTGGTAGTGATCCCAACCTTATAAACCATGTGAAGTCCATCCTTAAAAAGAAATTTCAAATGACAGACTTAGGACACTTACACTATTTTCTCGGTCTTCAAGTCTTGCAAACCAAGGAGGGTATTTCCATTTCCCAGTCCAAGTATGCTTGTGATATTCTTCGTCATTTTCACATGGAAGACTGTAAGCCAGCTCCTTCTCCCTTTCAGTCTGGAGTCAAACTTTCAGTCTCTTGTACTTCTCCTAAAGTTGATGCTACCTTATACCATCAACTTGTAGGAAAACTCTTGTACTTAACCCATACTCGTCCTGACCTTTCCTTTGTTGTTGGTC

Fln Alignment:

AllPine_a_c7298___MHEEYHSLLANDTWDLVPLPKGRKLVRCKWVYRTKYGPDGKVDKHKARLVAKGFSQVEGIDYTETFSPVAKMNSIRLVLSLAASFKWEVHQMDVKSAFLHGDLHEEIYMEQPIGF-IQKDSSLVCRLKKSLYGLKQAPRAWYAKMDSFLLESGFSRCHSDNTVYTKKVGNSXXXXXXXXXXXXLTGSDPNLINHVKSILKKKFQMTDLGHLHYFLGLQVLQTKEGISISQSKYACDILRHFHMEDCKPAPSPFQSGVKLSVSCTSPKVDATLYHQLVGKLLYLTHTRPDLSFVV
B8LKV8_______________MNKEMESIKKNDTWDLVDLPKEKECISVKWVYKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYT-KVNEQGQILIVCLYVDDLIYTGNLTIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSREQNEMDFDSTIFRKLVGSLMYLTATRPDIMYGV

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
263	33	66			0.997452
264		66		33	0.997452
279		33	66		0.997452
318	66		33		0.997452
325			75	25	0.996473
373	25		75		0.996473
386		66		33	0.997467
408		33		66	0.997452
451			66	33	0.997452
470	33	66			0.997452
483	33	66			0.997452
491	40		60		1.0
493			60	40	1.0
494	60		40		1.0
495		60		40	1.0
519		80		20	0.995493
521		20		80	0.995493
537			20	80	0.995493
550		80		20	0.995493
575	20	80			0.995493
620		20	80		0.995493
629		66		33	0.997452
641	66		33		0.997452
663	66		33		1.0
683	33	66			0.997452
816	66		33		0.997452
857		66		33	0.997452
911	33		66		0.997452
925	33		66		0.997452
952	33		66		0.997452
966	33		66		0.997452
1043	80			20	0.995493
1052	25		75		0.996473
1076	75	25			0.996473
1194		33		66	1.0
1210	33		66		0.997452
1248	66			33	0.997453
1261	25			75	0.996481
1262	25			75	0.996481
1264	50		50		1.0
1265			75	25	0.996473
1278		25		75	0.996473
1309			25	75	0.996473
1372	33		66		0.997476
1399	33		66		0.997455
1414	25			75	0.996486
1468	33		66		0.997452
1491		33		66	0.997453
1496		66		33	0.997476
1501	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain