SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93933

Length: 1572 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93933

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat receptor-like kinase [Ipomoea batatas]	-	-	0.0	70%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia.	-	-	0.0	61%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	5.628e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:2.7.11.3-	-	3.916e-09	-

Source	Gene names
Sma3	AT1G34210; AT1G60800; AT2G13790; AT2G13800; AT2G23950; AT3G24550; AT4G30520; AT4g30520; AT5G10290; AT5G16000; AT5G45780; AT5G63710; AT5G65240; At1g26150; At1g34210; At1g52290; At1g60800; At2g13780; At2g13790; At2g13800; At2g23950; At3g25560; At4g30520; At

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60800.1	NIK3 NSP-interacting kinase 3 chr1:22383601-22386931 REVERSE LENGTH=632	71%
RefSeq	Arabidopsis thaliana	NP_176279.1	NSP-interacting kinase 3 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002315684.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D1MEH6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 404 - 630

Fln protein: *DTAR*SSFEGQSKTRKLAVALVTSLGFVFVVSIGLLLWWRKRHNQQIFIDVNEQHNVDICLGHLKRFSFKELRVATNNFSNKNILGVGGYGIVYKGFLQDGTIVAIKRLKDGNVGGGEIQFQTEVEMISLAVHRNLLRLYGFCTTSRERLLVYPYMPNGSVASCLRDHINGKLALDWPTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDEYFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALDFGQAAKQKVVMLDWVKKLHQEKKLHLLADKDLKGNFDRVELEEMVQVSLLCTQFQPVHRPKMCDVLRMLEGDGLTERWEALQKIETPRYRVTEIPITYSELVEEDSSWLVQAIELSGPR*

Protein Length: 405

Fln nts: GTTGAGACACCGCAAGGTAGAGTTCCTTCGAAGGACAATCTAAAACCAGAAAGCTGGCTGTTGCCTTGGTCACTAGTCTTGGCTTTGTGTTTGTGGTTTCCATTGGACTTCTCCTTTGGTGGCGCAAGAGACACAATCAGCAAATTTTCATTGATGTCAATGAACAGCACAATGTTGACATTTGTCTAGGGCATTTGAAGAGATTCTCATTCAAAGAGTTACGTGTTGCCACTAATAATTTTAGTAACAAGAATATTTTAGGAGTAGGAGGATATGGAATTGTGTATAAAGGATTCCTACAAGATGGCACTATAGTAGCAATAAAAAGGTTGAAAGATGGTAATGTGGGAGGAGGAGAAATTCAATTTCAAACAGAGGTGGAAATGATCAGCTTGGCTGTGCATAGGAACCTATTACGATTGTATGGATTTTGCACAACCTCCAGAGAGAGGCTTCTGGTCTATCCCTACATGCCAAATGGAAGTGTGGCCTCTTGTCTTAGAGATCATATTAATGGAAAGCTTGCCCTGGACTGGCCTACTCGCAAGCGTATAGCCCTTGGAGCAGCTAGGGGACTGTTATATTTGCATGAGCAATGTGATCCCAAGATTATTCACCGGGATGTGAAAGCAGCAAATATATTACTGGATGAATATTTTGAAGCTGTTGTTGGAGATTTTGGGTTAGCAAAGCTCTTGGATCACAGGGATTCTCATGTGACTACTGCTGTTCGAGGGACGGTAGGTCACATTGCTCCAGAATACCTTTCAACGGGACAATCTTCAGAGAAAACTGATGTATTTGGCTTTGGGATATTACTGTTGGAACTCATTACAGGACAAAGGGCTTTAGATTTTGGGCAGGCTGCAAAGCAAAAAGTTGTAATGCTGGATTGGGTAAAGAAGCTTCATCAAGAGAAGAAGTTGCACCTCCTTGCTGATAAAGATCTTAAAGGCAATTTTGATAGAGTTGAGCTAGAAGAGATGGTTCAGGTTTCTTTGCTATGCACCCAATTTCAGCCTGTACATCGTCCAAAAATGTGTGATGTTTTGAGAATGTTGGAAGGTGATGGATTGACAGAACGGTGGGAAGCATTGCAAAAAATTGAAACCCCCCGATACAGAGTAACTGAGATACCCATAACATATTCCGAGTTGGTTGAAGAAGATTCTTCTTGGCTTGTTCAGGCAATTGAGCTATCTGGTCCCCGTTGA___TTTCACAGGCTTGCTAACATTCTAATATCAATGCTTCCATAGCTTGTTGTCTTTGCATCTTTTGTTGGTGCCCATGGAAACATATGCTGGTTCGTTGTATAGGTAGCTTTGGTACAGTCAAAATATTTCGCCATGCACCAAAAAATACGGATACCTTTATAATGGTCTCTCTATGTAATCTCAGGCAAACTTAAGCATATTCAGTATTTTTTATTGATAACTTGGTAGCTTTGCTTGTAATAGCTATGCTGTATCCTCGCTTGACACTTCATCAGCAGCCTAGCTTATTTGATAGTGGAGGGTTTTCACAAGAACTTTGTCAGATGGTTGTAAATGGTTGTTGAGATATTTCAAAGCA

Fln Alignment:

AllPine_a_c7012___EGQSKTRKLAVALVTSLGFVFVVSIGLLLWWRKRHNQQIFIDVNEQHNVDICLGHLKRFSFKELRVATNNFSNKNILGVGGYGIVYKGFLQDGTIVAIKRLKDGNVGGGEIQFQTEVEMISLAVHRNLLRLYGFCTTSRERLLVYPYMPNGSVASCLRDHINGKLALDWPTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDEYFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALDFGQAAK-QKVVMLDWVXXXXXXXXXXXXXXXXXXGNFDRVELEEMVQVSLLCTQFQPVHRPKMCDVLRMLEGDGLTERWEALQKIETPRYRVTE-IPITYSELVEEDSSWLVQAIELSGPR
D1MEH6_______________QSSSSTGAIAGGVAAGAALLFAAPAIGFAWWRRRKPQEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDGFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAQNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWEEWQKVEVVRSQEVELVPHRNSEWI-VDSTDNLHAVELSGPR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1396			62	37	1.0
1473		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain