SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93922

Length: 1206 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93922

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase [Medicago truncatula]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G21410.1	CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 chr4:11402463-11405025 REVERSE LENGTH=679	58%
RefSeq	Arabidopsis thaliana	NP_193872.2	cysteine-rich receptor-like protein kinase 29 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002317908.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQB9

Fln msg:

Fln protein: MNEVKLVAKIQHRNLVQLLGCCVEGPERLLVYEYLPNRSLDTFLFNAERRQVLDWQKRHNIIMGIARGLLYLHEDSQLRIIHRDVKTNNILLDDRLNPKIADFGLARLFPRDETHVHTRVAGTYGYMAPEYAMLGQLSVKVDVYSFGVVLLEIVSGRKNNDINSTQEMQSLLEWGWRLYKRGNLLNIIDPAIIKCCPQEEALRCIHVGLLCVQADAANRPAMSEVVLMLSTSSLTLPNPTKPAFVSLSFSGDLAPKDEAVTTSCAPAQTQLPSSSLSVCSSSSITTLEPR*

Protein Length: 292

Fln nts: AGTGAAGAAATTAGTCCTTAAGCTCTGGACAAGGAACAGATGAATTT_-_ATGAATGAAGTGAAGCTTGTAGCGAAAATTCAGCATCGAAATCTTGTACAGCTACTTGGTTGTTGTGTGGAAGGACCAGAAAGGTTGCTTGTTTATGAGTACTTGCCCAATAGAAGCCTGGACACCTTCCTCTTTAACGCAGAAAGACGCCAGGTTCTTGATTGGCAAAAACGCCATAACATCATAATGGGAATAGCTCGTGGCCTTCTTTATCTGCACGAAGATTCACAACTACGCATTATCCATCGAGATGTTAAAACAAACAACATTCTGCTTGACGACAGGCTGAACCCCAAGATAGCAGACTTCGGCTTGGCAAGGCTTTTTCCTCGTGACGAGACTCATGTTCACACCAGAGTTGCAGGGACATACGGTTATATGGCTCCAGAGTATGCAATGTTAGGGCAATTATCTGTAAAAGTAGATGTTTACAGCTTCGGTGTCGTTCTGCTTGAGATAGTGAGCGGAAGGAAAAACAATGACATCAACAGTACACAGGAAATGCAAAGCCTTTTAGAATGGGGATGGCGATTGTACAAGAGGGGAAATCTGCTCAATATAATCGATCCCGCAATAATTAAATGTTGCCCTCAGGAGGAAGCATTGAGATGCATCCATGTTGGTCTTCTATGCGTGCAGGCTGATGCAGCAAATCGTCCAGCAATGTCTGAAGTTGTTCTGATGCTGTCCACCAGTTCATTGACCTTACCGAATCCGACCAAGCCTGCTTTTGTAAGTCTTAGCTTCAGCGGGGATTTAGCTCCCAAAGATGAAGCTGTTACCACGTCATGTGCCCCTGCGCAGACCCAGCTACCTTCCTCGAGTCTCTCTGTATGTTCTTCTTCTTCAATTACTACTTTGGAACCTAGATAG___ATTCCAAACCTAGATAGATTAATATTGGGGCCAATTTCGTCATGTACTCAAATACTAATCTGCATTAGGATTGTTGCTGAGAATTCAGGCAGACTAATTTGTAACTGAACCTCTGGGAGGTTGCCAGTTCAATCCTAGCTGTAACTATTCGATGCCAGTGGCAGGCCAGCTGCGATATATCTTTGGTTGGAAAGGGTACAAACGTATTAACACTCATGTGGCCTTGGCGAGAATAGTTAGAACTGCACAAGAATCTAGGAGCTCGATTCCTTGCAGTATTTAAAAG

Fln Alignment:

AllPine_a_c6956___MNEVKLVAKIQHRNLVQLLGCCVEGPERLLVYEYLPNRSLDTFLFNAERRQVLDWQKRHNIIMGIARGLLYLHEDSQLRIIHRDVKTNNILLDDRLNPKIADFGLARLFPRDETHVHTRVAGTYGYMAPEYAMLGQLSVKVDVYSFGVVLLEIVSGRKNNDINSTQEMQSLLEWGWRLYKRGNLLNIIDPAIIKCCPQEEALRCIHVGLLCVQADAANRPAXXXXXXXXXXXXXXXPNPTKPAFVSLSFSGDLAPKDEAVTTSCAPAQTQLPXXXXXXXXXXXITTLEPR
A9NQB9_______________MNEVKLVAKIQHRNLVQLLGCCVDGPERLLVYEYLPNKSLDKLLFNPERRKVLDWQKRYNIIIGVARGLLYLHQDSQLRIIHRDVKVNNILLDDKLNPKIADFGLARLFPDDETHVHTRVAGTYGYMAPEYAMLGQLSVKADVYSFGVVLLEIVSGRRNTDIRLPQEQQILLEWGWRLCNGENLLNMIDPTIVGCCPQEQALRCIQVGLLCVQADVVNRPAMSDVVLMLSANSMGIPNPTKPAFVSLSFSGDACTKDGAVSTSSATSQIQRSNLTFSGCDSSSIISLEGR

SNPs (tot: 4)

Position	A %	C %	G %	Probability
1020	20	80		0.995493
1083	66	33		1.0
1172		80	20	0.995493
1181	20	80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
884	895	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain