SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93866

Length: 779 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93866

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MADS-box transcription factor GbMADS5 n=1 Tax=Ginkgo biloba RepID=Q58A78_GINBI	-	-	2.0e-17	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	MADS-box protein	-	-	1.881e-11	-

Source	Gene names
Sma3	AG; AG2; AGL11; AGL14; AGL15; AGL21; AGL24; AGL3; AGL34; AGL35; AGL36; AGL4; AGL5; AGL8; AGLL; AP1-c; AT4g24540; At2g22540; At4g11880; At4g24540; At4g37940; At5g13790; At5g51870; B1267B06.20; BoB028L01.100; Boi1AP1; CMR3; CerMADS2; CitMADS1; CpMADS1; F20D

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	glycine hydroxymethyltransferase activity	GO:0004372	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	glycine metabolic process	GO:0006544	Biological Process	-
Sma3	L-serine metabolic process	GO:0006563	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	maintenance of floral meristem identity	GO:0010076	Biological Process	-
Sma3	stomatal lineage progression	GO:0010440	Biological Process	-
Sma3	floral meristem determinacy	GO:0010582	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	indeterminate inflorescence morphogenesis	GO:0048283	Biological Process	-
Sma3	floral whorl development	GO:0048438	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Serine hydroxymethyltransferase	IPR001085	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Transcription factor, K-box	IPR002487	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13790.1	AGL15 AGAMOUS-like 15 chr5:4449128-4450802 REVERSE LENGTH=268	3.0e-21	76%
RefSeq	Arabidopsis thaliana	NP_196883.1	agamous-like MADS-box protein AGL15 [Arabidopsis thaliana]	4.0e-21	76%
RefSeq	Populus trichocarpa	XP_002314062.1	predicted protein [Populus trichocarpa]	4.0e-20	73%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
350		66	33		0.997453
351			33	66	0.997453
645	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain