SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93819

Length: 857 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene93819 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptide chain release factor 2, putative [Arabidopsis thaliana]	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	74%
Sma3	Peptide chain release factor 2, putative	-	-	2.447e-09	-

Source	Gene names
Sma3	CHLREDRAFT_116426; F13N6.6; F14G9.3; GSVIVT00022614001; LOC_Os03g19300; OSTLU_15725; Os03g0305700; OsI_11230; OsJ_10554; PHYPADRAFT_145938; POPTRDRAFT_1084675; POPTRDRAFT_892937; PRFB1; RCOM_1434900; VITISV_010541;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	translation release factor activity, codon specific	GO:0016149	Molecular Function	-
Sma3	translational termination	GO:0006415	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptide chain release factor class I/class II	IPR000352	-	-
Sma3	Peptide chain release factor 2	IPR004374	-	-
Sma3	Peptide chain release factor	IPR005139	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G56350.1	Peptide chain release factor 2 chr1:21094840-21097826 FORWARD LENGTH=482	75%
RefSeq	Arabidopsis thaliana	NP_176032.2	Peptide chain release factor 2 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002319484.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5B3R8

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 285 - 426

Fln protein: KNGISRLEQLNIELNRPDLWDDPHKAGRLSREHGSLTGKIKAVNEMEAELIEHVDMMELAHEENDSELEAETTRDLLDMRKLAKEKEIAALLSAEHDSCSCYLEIQAGAGGTESMDWAAMVLRMYKLWAQRCGFKVTVVDEMPGELAGIKRATMRMDGDYAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVAVIPILDDVSSRFQINESDLRIERFRSGGPGGQHANTTDSAVRIVHIPTGITATCQNERSQHRNKEMAMAVLQSRLDQLEMARQAQSNSQHT

Protein Length: 286

Fln nts: AAGAATGGGATCTCCAGGCTGGAGCAGTTGAATATTGAACTTAATAGGCCGGATTTATGGGATGATCCACATAAGGCTGGGCGACTTAGCCGTGAGCATGGTTCACTAACAGGAAAAATAAAAGCTGTCAATGAAATGGAAGCTGAACTCATTGAGCATGTGGATATGATGGAGCTTGCGCATGAAGAAAATGATTCAGAATTGGAGGCGGAAACAACCAGAGACTTGCTAGATATGCGGAAGCTTGCAAAGGAGAAAGAGATTGCAGCGTTGCTGTCTGCAGAGCATGATTCATGTTCTTGCTATTTAGAGATTCAAGCAGGAGCTGGGGGAACAGAGAGTATGGATTGGGCAGCTATGGTTTTGCGTATGTACAAACTGTGGGCTCAGCGTTGTGGATTCAAAGTCACTGTAGTGGATGAGATGCCAGGAGAATTAGCTGGGATCAAGCGTGCAACAATGAGAATGGATGGGGATTATGCATTTGGATATGCAAAGGCAGAGGTTGGGGTGCACAGATTAGTAAGGATCTCTCCTTTTGATAGCGCAAAGCGGCGACATACTTCATTTGCTGCTGTAGCGGTCATACCGATTTTAGATGATGTTTCATCACGGTTCCAGATCAATGAGTCAGATCTTCGTATTGAAAGGTTTCGATCAGGAGGCCCAGGAGGTCAGCATGCTAACACAACAGATAGTGCCGTGCGGATTGTGCATATTCCAACAGGAATTACTGCTACATGCCAAAATGAAAGATCTCAACATAGAAACAAGGAAATGGCAATGGCAGTGCTTCAGTCTCGACTAGATCAGCTCGAAATGGCTCGGCAAGCACAATCTAATTCTCAGCATACCCA

Fln Alignment:

AllPine_a_c5929___KNGISRLEQLNIELNRPDLWDDPHKAGRLSREHGSLTGKIKAVNEMEAELIEHVDMMELAHEENDSELEAETTRDLLDMRKLAKEKEIAALLSAEHDSCSCYLEIQAGAGGTESMDWAAMVLRMYKLWAQRCGFKVTVVDEMPGELAGIKRATMRMDGDYAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVAVIPILDDVSSRFQINESDLRIERFRSGGPGGQHANTTDSAVRIVHIPTGITATCQNERSQHRNKEMAMAVLQSRLDQLEMARQAQSNSQHT
A5B3R8_______________KKLVVRLDVLSAQLNKPDLWDNPVHAGKISREHGMLMGKMKGVKNLEQELLEHIDMVKLAREENDPELESESLKALLGMRRNSKEKELEALLAGDHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKMWAQRRGYGVTVVDEMPGETAGIKRATIKVDGEYSFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPILGDASSHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEISRQAQINAQHT

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
283	20		80		0.995493
284		80		20	0.995493
285	80		20		0.995493
286			80	20	0.995493
554		25		75	0.996473
592	66		33		0.997452
654		66		33	0.997452
657		66		33	0.997452
727	25	75			0.996473
730			25	75	0.996473
731	25			75	0.996473
732	25	75			0.996473
735			25	75	0.996473
743			25	75	0.996473
744	25			75	0.996473
745	25			75	0.996473
746	75	25			0.996473
748		25		75	0.996479
749	25			75	0.996479

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain